{ "type": "genome", "identifier": "GCF_900155605.1", "organism": "Actinomyces marseillensis", "title": "Actinomyces marseillensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900155605.1", "bioproject": "PRJNA224116", "biosample": "SAMEA18122668", "wgs_master": "FTLP00000000.1", "refseq_category": "reference genome", "taxid": "1852376", "species_taxid": "1852376", "organism_name": "Actinomyces marseillensis", "infraspecific_name": "strain=Marseille-P2818T", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/02/02", "asm_name": "PRJEB18271", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900155605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/155/605/GCF_900155605.1_PRJEB18271", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2007569", "genome_size_ungapped": "1982232", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900155605.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "1766", "protein_coding_gene_count": "1673", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-02-02", "dateModified": "2017-02-02", "datePublished": "2017-02-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomyces marseillensis" ], "sample_taxid": [ "1852376" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.548 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.66, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2007569", "Number of Sequences": "2", "Longest Sequences (bp)": "2003922", "N50 (bp)": "2003922", "Gap Ratio (%)": "1.263518", "GCcontent (%)": "57.1", "Number of CDSs": "1720", "Average Protein Length": "344.2", "Coding Ratio (%)": "88.5", "Number of rRNAs": "10", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Schaalia hyovaginalis", "strain": "strain=DSM 10695", "accession": "GCA_014208035.1", "taxid": 29316, "species_taxid": 29316, "relation_to_type": "type", "validated": true, "ani": 79.5416, "matched_fragments": 100, "total_fragments": 668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schaalia meyeri", "strain": "strain=FDAARGOS_985", "accession": "GCA_016127995.1", "taxid": 52773, "species_taxid": 52773, "relation_to_type": "type", "validated": true, "ani": 79.4308, "matched_fragments": 112, "total_fragments": 668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schaalia meyeri", "strain": "strain=DSM 20733", "accession": "GCA_900105015.1", "taxid": 52773, "species_taxid": 52773, "relation_to_type": "type", "validated": true, "ani": 79.2077, "matched_fragments": 103, "total_fragments": 668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schaalia vaccimaxillae", "strain": "strain=DSM 15804", "accession": "GCA_000420425.1", "taxid": 183916, "species_taxid": 183916, "relation_to_type": "type", "validated": true, "ani": 78.5532, "matched_fragments": 84, "total_fragments": 668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces howellii", "strain": "strain=NCTC11636", "accession": "GCA_900637165.1", "taxid": 52771, "species_taxid": 52771, "relation_to_type": "type", "validated": true, "ani": 78.3779, "matched_fragments": 54, "total_fragments": 668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schaalia suimastitidis", "strain": "strain=DSM 15538", "accession": "GCA_000429105.1", "taxid": 121163, "species_taxid": 121163, "relation_to_type": "type", "validated": true, "ani": 77.9273, "matched_fragments": 66, "total_fragments": 668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomyces urogenitalis", "strain": "strain=DSM 15434", "accession": "GCA_000159035.1", "taxid": 103621, "species_taxid": 103621, "relation_to_type": "type", "validated": true, "ani": 77.5424, "matched_fragments": 55, "total_fragments": 668, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.66, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_900155605.1", "gtdb_species": "s__Pauljensenia marseillensis", "ani": 99.9998, "matched_fragments": 664, "total_fragments": 668, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000758755.1", "gtdb_species": "s__Pauljensenia sp000758755", "ani": 94.8984, "matched_fragments": 587, "total_fragments": 668, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.30", "min_intra_species_ani": "97.11", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900554605.1", "gtdb_species": "s__Pauljensenia sp900554605", "ani": 93.9388, "matched_fragments": 297, "total_fragments": 668, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001070855.1", "gtdb_species": "s__Pauljensenia pyogenes_A", "ani": 84.7315, "matched_fragments": 432, "total_fragments": 668, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.06", "min_intra_species_ani": "97.06", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000308055.1", "gtdb_species": "s__Pauljensenia sp000308055", "ani": 84.2712, "matched_fragments": 418, "total_fragments": 668, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.51", "min_intra_species_ani": "95.51", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_900541895.1", "gtdb_species": "s__Pauljensenia sp900541895", "ani": 83.8118, "matched_fragments": 393, "total_fragments": 668, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.30", "min_intra_species_ani": "95.78", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_018375675.1", "gtdb_species": "s__Pauljensenia sp018375675", "ani": 79.7229, "matched_fragments": 132, "total_fragments": 668, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.165, "cell_length": 0.258, "doubling_h": null, "growth_tmp": 36.951, "optimum_tmp": 36.833, "optimum_ph": 7.0, "genome_size": 2699137.843, "gc_content": 65.627, "coding_genes": 2308.7, "rRNA16S_genes": 3.0, "tRNA_genes": 49.8, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.2, "anaerobic_respiration": 0.428, "aerobic_respiration": 0.371, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.95, "coccus_cell_shape": 0.05, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinomyces", "marseillensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }