{ "type": "genome", "identifier": "GCF_900155925.1", "organism": "Cellulosimicrobium aquatile", "title": "Cellulosimicrobium aquatile", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900155925.1", "bioproject": "PRJNA224116", "biosample": "SAMN05518682", "wgs_master": "FTMI00000000.1", "refseq_category": "reference genome", "taxid": "1612203", "species_taxid": "1612203", "organism_name": "Cellulosimicrobium aquatile", "infraspecific_name": "strain=3bp", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/14", "asm_name": "IMG-taxon 2681812868 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900155925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/155/925/GCF_900155925.1_IMG-taxon_2681812868_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4317712", "genome_size_ungapped": "4317712", "gc_percent": "74.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900155925.1-RS_2024_04_25", "annotation_date": "2024-04-25", "total_gene_count": "3850", "protein_coding_gene_count": "3777", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-14", "dateModified": "2017-01-14", "datePublished": "2017-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulosimicrobium aquatile" ], "sample_taxid": [ "1612203" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.112 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4317712", "Number of Sequences": "14", "Longest Sequences (bp)": "989875", "N50 (bp)": "628728", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.7", "Number of CDSs": "3827", "Average Protein Length": "342.7", "Coding Ratio (%)": "91.1", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=JCM 14302", "accession": "GCA_004519295.1", 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"species_taxid": 2708133, "relation_to_type": "type", "validated": true, "ani": 83.469, "matched_fragments": 904, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=JCM3160", "accession": "GCA_004121315.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 81.7542, "matched_fragments": 872, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 81.716, "matched_fragments": 879, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia jenensis", "strain": "strain=DSM 46000", "accession": "GCA_016907235.1", "taxid": 162169, "species_taxid": 162169, "relation_to_type": "type", "validated": true, "ani": 81.5597, "matched_fragments": 902, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 81.5436, "matched_fragments": 855, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 81.5005, "matched_fragments": 892, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=DSM 25478", "accession": "GCA_002797595.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 81.2521, "matched_fragments": 740, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=NBRC 108568", "accession": "GCA_016863455.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 81.25, "matched_fragments": 734, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 79.8228, "matched_fragments": 690, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 79.3942, "matched_fragments": 719, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora kroppenstedtii", "strain": "strain=DSM 19349", "accession": "GCA_000515355.1", "taxid": 440482, "species_taxid": 440482, "relation_to_type": "type", "validated": true, "ani": 79.3066, "matched_fragments": 682, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora sukumoe", "strain": "strain=DSM 44121", "accession": "GCA_014137995.1", "taxid": 88382, "species_taxid": 88382, "relation_to_type": "type", "validated": true, "ani": 79.3016, "matched_fragments": 807, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myceligenerans xiligouense", "strain": "strain=DSM 15700", "accession": "GCA_003814695.1", "taxid": 253184, "species_taxid": 253184, "relation_to_type": "type", "validated": true, "ani": 78.9333, "matched_fragments": 611, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" } ], 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"min_intra_species_ani": "98.58", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_006539945.1", "gtdb_species": "s__Cellulosimicrobium cellulans", "ani": 89.9313, "matched_fragments": 1178, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016907755.1", "gtdb_species": "s__Cellulosimicrobium cellulans_D", "ani": 89.7006, "matched_fragments": 1228, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "99.18", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009708005.2", "gtdb_species": "s__Cellulosimicrobium sp009708005", "ani": 89.506, "matched_fragments": 1207, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010287905.1", "gtdb_species": "s__Cellulosimicrobium fucosivorans", "ani": 89.3271, "matched_fragments": 1124, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.84", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_014137995.1", "gtdb_species": "s__Promicromonospora sukumoe", "ani": 79.3024, "matched_fragments": 807, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000515355.1", "gtdb_species": "s__Promicromonospora kroppenstedtii", "ani": 79.2682, "matched_fragments": 689, "total_fragments": 1432, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.09", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.111, "cell_length": 0.039, "doubling_h": null, "growth_tmp": 29.333, "optimum_tmp": 29.333, "optimum_ph": 7.0, "genome_size": 4317712.0, "gc_content": 74.348, "coding_genes": 3965.5, "rRNA16S_genes": 3.0, "tRNA_genes": 52.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.333, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.5, "coccus_cell_shape": 0.5, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cellulosimicrobium", "aquatile" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }