{ "type": "genome", "identifier": "GCF_900156285.1", "organism": "Halanaerobium kushneri", "title": "Halanaerobium kushneri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900156285.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421834", "wgs_master": "FTNC00000000.1", "refseq_category": "reference genome", "taxid": "56779", "species_taxid": "56779", "organism_name": "Halanaerobium kushneri", "infraspecific_name": "strain=ATCC 700103", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/14", "asm_name": "IMG-taxon 2681812893 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900156285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/285/GCF_900156285.1_IMG-taxon_2681812893_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3222148", "genome_size_ungapped": "3222058", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900156285.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3040", "protein_coding_gene_count": "2946", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-14", "dateModified": "2017-01-14", "datePublished": "2017-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Halanaerobium kushneri" ], "sample_taxid": [ "56779" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.893 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3222148", "Number of Sequences": "54", "Longest Sequences (bp)": "390677", "N50 (bp)": "130640", "Gap Ratio (%)": "0.002793", "GCcontent (%)": "34.2", "Number of CDSs": "2954", "Average Protein Length": "326.1", "Coding Ratio (%)": "89.7", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halanaerobium kushneri", "strain": "strain=ATCC 700103", "accession": "GCA_900156285.1", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000165465.1", "gtdb_species": "s__Halanaerobium praevalens", "ani": 79.5618, "matched_fragments": 364, "total_fragments": 1047, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halanaerobiales;f__Halanaerobiaceae;g__Halanaerobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.265, "cell_length": 0.457, "doubling_h": 0.54, "growth_tmp": 37.0, "optimum_tmp": 38.5, "optimum_ph": 9.2, "genome_size": 3222148.0, "gc_content": 31.737, "coding_genes": 2191.333, "rRNA16S_genes": 4.0, "tRNA_genes": 56.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, 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