{
    "type": "genome",
    "identifier": "GCF_900156405.1",
    "organism": "Shewanella morhuae",
    "title": "Shewanella morhuae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900156405.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05421840",
        "wgs_master": "FTNN00000000.1",
        "refseq_category": "na",
        "taxid": "365591",
        "species_taxid": "365591",
        "organism_name": "Shewanella morhuae",
        "infraspecific_name": "strain=ATCC BAA-1205",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/14",
        "asm_name": "IMG-taxon 2681812898 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900156405.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/405/GCF_900156405.1_IMG-taxon_2681812898_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4190369",
        "genome_size_ungapped": "4187389",
        "gc_percent": "44.000000",
        "replicon_count": "0",
        "scaffold_count": "32",
        "contig_count": "32",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900156405.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "3656",
        "protein_coding_gene_count": "3497",
        "non_coding_gene_count": "90",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-14",
    "dateModified": "2017-01-14",
    "datePublished": "2017-01-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Shewanella morhuae"
        ],
        "sample_taxid": [
            "365591"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.195 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4190369",
        "Number of Sequences": "32",
        "Longest Sequences (bp)": "524476",
        "N50 (bp)": "251215",
        "Gap Ratio (%)": "0.071115",
        "GCcontent (%)": "44.0",
        "Number of CDSs": "3572",
        "Average Protein Length": "332.1",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "5",
        "Number of tRNAs": "75",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Shewanella morhuae",
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                "species_taxid": 365591,
                "relation_to_type": "type",
                "validated": true,
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                "status": "conclusive"
            },
            {
                "organism_name": "Shewanella glacialipiscicola",
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                "species_taxid": 614069,
                "relation_to_type": "type",
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                "status": "below_threshold"
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            {
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                "ani_threshold": 95,
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            },
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                "species_taxid": 365590,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella oncorhynchi",
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                "accession": "GCA_012584455.1",
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                "species_taxid": 2726434,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella seohaensis",
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                "accession": "GCA_023283775.1",
                "taxid": 755175,
                "species_taxid": 755175,
                "relation_to_type": "type",
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                "ani": 80.4451,
                "matched_fragments": 778,
                "total_fragments": 1380,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella seohaensis",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Shewanella saliphila",
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                "accession": "GCA_023283695.1",
                "taxid": 2282698,
                "species_taxid": 2282698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5487,
                "matched_fragments": 286,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_900156405.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
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                "mean_intra_species_ani": "96.88",
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
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        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 0.812,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "morhuae"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}