{
    "type": "genome",
    "identifier": "GCF_900156415.1",
    "organism": "Pontibacter lucknowensis",
    "title": "Pontibacter lucknowensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900156415.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05421545",
        "wgs_master": "FTNM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1077936",
        "species_taxid": "1077936",
        "organism_name": "Pontibacter lucknowensis",
        "infraspecific_name": "strain=DM9",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/15",
        "asm_name": "IMG-taxon 2681812905 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900156415.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/415/GCF_900156415.1_IMG-taxon_2681812905_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4474059",
        "genome_size_ungapped": "4473870",
        "gc_percent": "50.000000",
        "replicon_count": "0",
        "scaffold_count": "19",
        "contig_count": "19",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900156415.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "3918",
        "protein_coding_gene_count": "3861",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-15",
    "dateModified": "2017-01-15",
    "datePublished": "2017-01-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pontibacter lucknowensis"
        ],
        "sample_taxid": [
            "1077936"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.276 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4474059",
        "Number of Sequences": "19",
        "Longest Sequences (bp)": "1389220",
        "N50 (bp)": "1059850",
        "Gap Ratio (%)": "0.004224",
        "GCcontent (%)": "50.1",
        "Number of CDSs": "3848",
        "Average Protein Length": "339.7",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pontibacter lucknowensis",
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                "species_taxid": 1077936,
                "relation_to_type": "type",
                "validated": true,
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                "status": "conclusive"
            },
            {
                "organism_name": "Pontibacter virosus",
                "strain": "strain=DSM 100231",
                "accession": "GCA_003096355.1",
                "taxid": 1765052,
                "species_taxid": 1765052,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1569,
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                "total_fragments": 1482,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontibacter amylolyticus",
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                "accession": "GCA_014638845.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontibacter ramchanderi",
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                "accession": "GCA_002846395.1",
                "taxid": 1179743,
                "species_taxid": 1179743,
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                "validated": true,
                "ani": 83.735,
                "matched_fragments": 1136,
                "total_fragments": 1482,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontibacter indicus",
                "strain": "strain=LP100",
                "accession": "GCA_900156345.1",
                "taxid": 1317125,
                "species_taxid": 1317125,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1127,
                "matched_fragments": 1134,
                "total_fragments": 1482,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontibacter aquaedesilientis",
                "strain": "strain=JH31",
                "accession": "GCA_014773225.1",
                "taxid": 2766980,
                "species_taxid": 2766980,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.201,
                "matched_fragments": 827,
                "total_fragments": 1482,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontibacter ruber",
                "strain": "strain=JC213",
                "accession": "GCA_023630205.1",
                "taxid": 1343895,
                "species_taxid": 1343895,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7869,
                "matched_fragments": 569,
                "total_fragments": 1482,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontibacter deserti",
                "strain": "strain=JC215",
                "accession": "GCA_023630255.1",
                "taxid": 1343896,
                "species_taxid": 1343896,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1925,
                "matched_fragments": 336,
                "total_fragments": 1482,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontibacter mangrovi",
                "strain": "strain=HB172049",
                "accession": "GCA_006385705.1",
                "taxid": 2589816,
                "species_taxid": 2589816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.111,
                "matched_fragments": 499,
                "total_fragments": 1482,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontibacter arcticus",
                "strain": "strain=2b14",
                "accession": "GCA_003284895.1",
                "taxid": 2080288,
                "species_taxid": 2080288,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5714,
                "matched_fragments": 315,
                "total_fragments": 1482,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900156415.1",
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                "ani": 100.0,
                "matched_fragments": 1481,
                "total_fragments": 1482,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "98.51",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_015686655.1",
                "gtdb_species": "s__Pontibacter sp015686655",
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                "matched_fragments": 1297,
                "total_fragments": 1482,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003096355.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002846395.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156345.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014773225.1",
                "gtdb_species": "s__Pontibacter sp014773225",
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                "matched_fragments": 828,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.188,
        "cell_length": 0.342,
        "doubling_h": null,
        "growth_tmp": 28.5,
        "optimum_tmp": 28.0,
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        "genome_size": 4474059.0,
        "gc_content": 51.009,
        "coding_genes": 4209.666,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
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        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Pontibacter",
        "lucknowensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}