{ "type": "genome", "identifier": "GCF_900156525.1", "organism": "Pontibaca methylaminivorans", "title": "Pontibaca methylaminivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900156525.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421849", "wgs_master": "FTPS00000000.1", "refseq_category": "reference genome", "taxid": "515897", "species_taxid": "515897", "organism_name": "Pontibaca methylaminivorans", "infraspecific_name": "strain=DSM 21219", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/20", "asm_name": "IMG-taxon 2681812934 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900156525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/525/GCF_900156525.1_IMG-taxon_2681812934_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2650984", "genome_size_ungapped": "2650984", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900156525.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2598", "protein_coding_gene_count": "2518", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-20", "dateModified": "2017-01-20", "datePublished": "2017-01-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontibaca methylaminivorans" ], "sample_taxid": [ "515897" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:East Sea" ], "sample_host_location_id": [], "data_size": "0.724 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2650984", "Number of Sequences": "8", "Longest Sequences (bp)": "2339020", "N50 (bp)": "2339020", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "2559", "Average Protein Length": "310.6", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pontibaca methylaminivorans", "strain": "strain=DSM 21219", "accession": 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78.427, "matched_fragments": 337, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 78.4028, "matched_fragments": 353, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 78.3299, "matched_fragments": 350, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=CECT 8110", "accession": "GCA_900172255.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 78.3202, "matched_fragments": 322, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus mutanolyticus", "strain": "strain=RSP-02", "accession": "GCA_003285265.1", "taxid": 1499308, "species_taxid": 1499308, "relation_to_type": "type", "validated": true, "ani": 78.3138, "matched_fragments": 283, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=DSM 29507", "accession": "GCA_003634925.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 78.2574, "matched_fragments": 326, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibaca salina", "strain": "strain=S1109L", "accession": "GCA_016307205.1", "taxid": 2795731, "species_taxid": 2795731, "relation_to_type": "type", "validated": true, "ani": 78.0841, "matched_fragments": 322, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { 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"accession": "GCA_900106675.1", "taxid": 765699, "species_taxid": 765699, "relation_to_type": "type", "validated": true, "ani": 77.9989, "matched_fragments": 292, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 77.9793, "matched_fragments": 292, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter sabulilitoris", "strain": "strain=HSMS-29", "accession": "GCA_005887615.1", "taxid": 2562655, "species_taxid": 2562655, "relation_to_type": "type", "validated": true, "ani": 77.9069, "matched_fragments": 290, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chachezhania sediminis", "strain": "strain=CAU 1508", "accession": "GCA_009765275.1", "taxid": 2599291, 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