{
    "type": "genome",
    "identifier": "GCF_900156625.1",
    "organism": "Zobellia uliginosa",
    "title": "Zobellia uliginosa",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900156625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05421766",
        "wgs_master": "FTOB00000000.1",
        "refseq_category": "reference genome",
        "taxid": "143224",
        "species_taxid": "143224",
        "organism_name": "Zobellia uliginosa",
        "infraspecific_name": "strain=DSM 2061",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/15",
        "asm_name": "IMG-taxon 2681813510 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900156625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/625/GCF_900156625.1_IMG-taxon_2681813510_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5303163",
        "genome_size_ungapped": "5303163",
        "gc_percent": "42.500000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "27",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900156625.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "4404",
        "protein_coding_gene_count": "4341",
        "non_coding_gene_count": "44",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-15",
    "dateModified": "2017-01-15",
    "datePublished": "2017-01-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Zobellia uliginosa"
        ],
        "sample_taxid": [
            "143224"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.504 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5303163",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "1136348",
        "N50 (bp)": "914779",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.6",
        "Number of CDSs": "4325",
        "Average Protein Length": "364.7",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Zobellia uliginosa",
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                "species_taxid": 143224,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1748,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Zobellia galactanivorans",
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                "accession": "GCA_000973105.1",
                "taxid": 63186,
                "species_taxid": 63186,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1750,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_018728565.1",
                "taxid": 248907,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zobellia amurskyensis",
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                "taxid": 248905,
                "species_taxid": 248905,
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                "validated": true,
                "ani": 80.1755,
                "matched_fragments": 826,
                "total_fragments": 1750,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zobellia laminariae",
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                "accession": "GCA_009725995.1",
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                "species_taxid": 248906,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5452,
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                "total_fragments": 1750,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zobellia barbeyronii",
                "strain": "strain=KMM 6746",
                "accession": "GCA_018603515.1",
                "taxid": 2748009,
                "species_taxid": 2748009,
                "relation_to_type": "type",
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                "ani": 79.5248,
                "matched_fragments": 755,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zobellia roscoffensis",
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                "accession": "GCA_015330165.1",
                "taxid": 2779508,
                "species_taxid": 2779508,
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                "ani": 79.3884,
                "matched_fragments": 740,
                "total_fragments": 1750,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Euzebyella marina",
                "strain": "strain=CY01",
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                "taxid": 1761453,
                "species_taxid": 1761453,
                "relation_to_type": "type",
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                "matched_fragments": 241,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Robertkochia sediminum",
                "strain": "strain=1368",
                "accession": "GCA_016786255.1",
                "taxid": 2785326,
                "species_taxid": 2785326,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3261,
                "matched_fragments": 56,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda aurantiaca",
                "strain": "strain=HME9304",
                "accession": "GCA_003269425.1",
                "taxid": 1383885,
                "species_taxid": 1383885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2017,
                "matched_fragments": 93,
                "total_fragments": 1750,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_900156625.1",
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                "matched_fragments": 1748,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            {
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                "num_clustered_genomes": 3,
                "status": "-"
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                "accession": "GCF_000745185.1",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "uliginosa"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}