{ "type": "genome", "identifier": "GCF_900156655.1", "organism": "Rhodobacter aestuarii", "title": "Rhodobacter aestuarii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900156655.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421580", "wgs_master": "FTOG00000000.1", "refseq_category": "reference genome", "taxid": "453582", "species_taxid": "453582", "organism_name": "Rhodobacter aestuarii", "infraspecific_name": "strain=DSM 19945", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/14", "asm_name": "IMG-taxon 2681813516 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900156655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/655/GCF_900156655.1_IMG-taxon_2681813516_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3841151", "genome_size_ungapped": "3841151", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900156655.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3674", "protein_coding_gene_count": "3582", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-14", "dateModified": "2017-01-14", "datePublished": "2017-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodobacter aestuarii" ], "sample_taxid": [ "453582" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.069 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3841151", "Number of Sequences": "31", "Longest Sequences (bp)": "685589", "N50 (bp)": "283222", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.1", "Number of CDSs": "3613", "Average Protein Length": "321.6", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodobacter aestuarii", "strain": "strain=DSM 19945", "accession": "GCA_900156655.1", "taxid": 453582, "species_taxid": 453582, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1263, "total_fragments": 1265, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rhodobacter aestuarii", "strain": "strain=JA296", "accession": "GCA_003053525.1", "taxid": 453582, "species_taxid": 453582, "relation_to_type": "type", "validated": true, "ani": 99.9985, "matched_fragments": 1265, "total_fragments": 1265, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rhodobacter capsulatus", "strain": "strain=DSM 1710", "accession": "GCA_003254295.1", "taxid": 1061, "species_taxid": 1061, "relation_to_type": "type", "validated": true, "ani": 80.3031, "matched_fragments": 692, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter viridis", "strain": "strain=JA737", "accession": "GCA_003217355.1", "taxid": 1054202, "species_taxid": 1054202, "relation_to_type": "type", "validated": true, "ani": 80.2744, "matched_fragments": 678, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter ferrireducens", "strain": "strain=CCTCC AB2012026", "accession": "GCA_004022265.1", "taxid": 1215032, "species_taxid": 1215032, "relation_to_type": "type", "validated": true, "ani": 78.9925, "matched_fragments": 452, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter hankyongi", "strain": "strain=BO-81", "accession": "GCA_003664585.1", "taxid": 2294033, "species_taxid": 2294033, "relation_to_type": "type", "validated": true, "ani": 78.7533, "matched_fragments": 474, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter huangdaonensis", "strain": "strain=CGMCC 1.12963", "accession": "GCA_004022465.1", "taxid": 2501515, "species_taxid": 2501515, "relation_to_type": "type", "validated": true, "ani": 78.6661, "matched_fragments": 472, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=JA123", "accession": "GCA_900217755.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 78.5064, "matched_fragments": 381, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioclava atlantica", "strain": "strain=13D2W-2", "accession": "GCA_000737065.1", "taxid": 1317124, "species_taxid": 1317124, "relation_to_type": "type", "validated": true, "ani": 78.1064, "matched_fragments": 358, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 77.6706, "matched_fragments": 275, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 77.6185, "matched_fragments": 336, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola algicola", "strain": "strain=ETT8", "accession": "GCA_010915705.1", "taxid": 2709381, "species_taxid": 2709381, "relation_to_type": "type", "validated": true, "ani": 77.5784, "matched_fragments": 273, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter ruber", "strain": "strain=CCP-1", "accession": "GCA_009908315.1", "taxid": 1985673, "species_taxid": 1985673, "relation_to_type": "type", "validated": true, "ani": 77.3604, "matched_fragments": 273, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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