{ "type": "genome", "identifier": "GCF_900156685.1", "organism": "Chryseobacterium piscicola", "title": "Chryseobacterium piscicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900156685.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421796", "wgs_master": "FTOJ00000000.1", "refseq_category": "reference genome", "taxid": "551459", "species_taxid": "551459", "organism_name": "Chryseobacterium piscicola", "infraspecific_name": "strain=DSM 21068", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/14", "asm_name": "IMG-taxon 2681813514 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900156685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/685/GCF_900156685.1_IMG-taxon_2681813514_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3452400", "genome_size_ungapped": "3452400", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900156685.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3109", "protein_coding_gene_count": "3039", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-14", "dateModified": "2017-01-14", "datePublished": "2017-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium piscicola" ], "sample_taxid": [ "551459" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Region Los Lagos, Osorno" ], "sample_host_location_id": [], "data_size": "0.959 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3452400", "Number of Sequences": "28", "Longest Sequences (bp)": "874549", "N50 (bp)": "311216", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.8", "Number of CDSs": "3036", "Average Protein Length": "326.1", "Coding Ratio (%)": "86.0", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium piscicola", "strain": "strain=DSM 21068", "accession": "GCA_900156685.1", "taxid": 551459, "species_taxid": 551459, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1135, "total_fragments": 1137, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium piscicola", "strain": "strain=DSM 21068", "accession": "GCA_002943675.1", "taxid": 551459, "species_taxid": 551459, "relation_to_type": "type", "validated": true, "ani": 99.9771, "matched_fragments": 1118, "total_fragments": 1137, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium caseinilyticum", "strain": "strain=GCR10", "accession": "GCA_014837145.1", "taxid": 2771428, "species_taxid": 2771428, "relation_to_type": "type", "validated": true, "ani": 82.598, "matched_fragments": 805, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 81.1107, "matched_fragments": 663, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium indoltheticum", "strain": "strain=ATCC 27950", "accession": "GCA_900156145.1", "taxid": 254, "species_taxid": 254, "relation_to_type": "type", "validated": true, "ani": 81.0768, "matched_fragments": 626, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium indoltheticum", "strain": "strain=ATCC 27950", "accession": "GCA_003815915.1", "taxid": 254, "species_taxid": 254, "relation_to_type": "type", "validated": true, "ani": 81.0627, "matched_fragments": 624, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aquaticum", "strain": "strain=KCTC 12483", "accession": "GCA_001420285.1", "taxid": 452084, "species_taxid": 452084, "relation_to_type": "type", "validated": true, "ani": 80.7583, "matched_fragments": 608, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aquaticum subsp. greenlandense", "strain": "strain=UMB34", "accession": "GCA_001507325.1", "taxid": 345663, "species_taxid": 452084, "relation_to_type": "type", "validated": true, "ani": 80.6279, "matched_fragments": 636, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium formosense", "strain": "strain=DSM 17452", "accession": "GCA_900116415.1", "taxid": 236814, "species_taxid": 236814, "relation_to_type": "type", "validated": true, "ani": 80.1552, "matched_fragments": 611, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 79.7612, "matched_fragments": 560, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium limigenitum", "strain": "strain=SUR2", "accession": "GCA_900114875.1", "taxid": 1612149, "species_taxid": 1612149, "relation_to_type": "type", "validated": true, "ani": 79.5179, "matched_fragments": 529, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 79.4539, "matched_fragments": 506, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 79.4465, "matched_fragments": 477, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium echinoideorum", "strain": "strain=CC-CZW010", "accession": "GCA_007474535.1", "taxid": 1549648, "species_taxid": 1549648, "relation_to_type": "type", "validated": true, "ani": 79.4367, "matched_fragments": 476, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 78.2007, "matched_fragments": 353, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900156685.1", "gtdb_species": "s__Chryseobacterium piscicola", "ani": 100.0, "matched_fragments": 1135, "total_fragments": 1137, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_014837145.1", "gtdb_species": "s__Chryseobacterium caseinilyticum", "ani": 82.6079, "matched_fragments": 804, "total_fragments": 1137, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001424105.1", "gtdb_species": "s__Chryseobacterium sp001424105", "ani": 82.5315, "matched_fragments": 796, "total_fragments": 1137, 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