{ "type": "genome", "identifier": "GCF_900156695.1", "organism": "Phaeovulum vinaykumarii", "title": "Phaeovulum vinaykumarii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900156695.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421795", "wgs_master": "FTOM00000000.1", "refseq_category": "na", "taxid": "407234", "species_taxid": "407234", "organism_name": "Phaeovulum vinaykumarii", "infraspecific_name": "strain=DSM 18714", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/14", "asm_name": "IMG-taxon 2681813513 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900156695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/695/GCF_900156695.1_IMG-taxon_2681813513_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3481684", "genome_size_ungapped": "3481377", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-29", "total_gene_count": "3318", "protein_coding_gene_count": "3204", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-14", "dateModified": "2017-01-14", "datePublished": "2017-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Phaeovulum vinaykumarii" ], "sample_taxid": [ "407234" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Bay of Bengal, Visakhapatnam, Ramakrishna beach" ], "sample_host_location_id": [], "data_size": "0.940 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3481684", "Number of Sequences": "27", "Longest Sequences (bp)": "927645", "N50 (bp)": "813265", "Gap Ratio (%)": "0.008818", "GCcontent (%)": "68.3", "Number of CDSs": "3314", "Average Protein Length": "311.0", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=DSM 18714", "accession": "GCA_900156695.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1147, "total_fragments": 1149, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=JA123", "accession": "GCA_900217755.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 99.9966, "matched_fragments": 1147, "total_fragments": 1149, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 80.273, "matched_fragments": 526, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter hankyongi", "strain": "strain=BO-81", "accession": "GCA_003664585.1", "taxid": 2294033, "species_taxid": 2294033, "relation_to_type": "type", "validated": true, "ani": 80.2713, "matched_fragments": 588, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter huangdaonensis", "strain": "strain=CGMCC 1.12963", "accession": "GCA_004022465.1", "taxid": 2501515, "species_taxid": 2501515, "relation_to_type": "type", "validated": true, "ani": 80.2315, "matched_fragments": 590, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter mobilis", "strain": "strain=cai42", "accession": "GCA_001620265.1", "taxid": 1335048, "species_taxid": 1335048, "relation_to_type": "type", "validated": true, "ani": 80.2019, "matched_fragments": 584, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus binzhouensis", "strain": "strain=wg1", "accession": "GCA_016446475.1", "taxid": 2796149, "species_taxid": 2796149, "relation_to_type": "type", "validated": true, "ani": 80.0756, "matched_fragments": 527, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter capsulatus", "strain": "strain=DSM 1710", "accession": "GCA_003254295.1", "taxid": 1061, "species_taxid": 1061, "relation_to_type": "type", "validated": true, "ani": 79.9898, "matched_fragments": 606, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 79.841, "matched_fragments": 553, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus versutus", "strain": "strain=DSM 582", "accession": "GCA_000763885.1", "taxid": 34007, "species_taxid": 34007, "relation_to_type": "type", "validated": true, "ani": 79.8272, "matched_fragments": 545, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 79.8169, "matched_fragments": 515, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sphaerophysae", "strain": "strain=HAMBI 3106", "accession": "GCA_000763805.1", "taxid": 690417, "species_taxid": 690417, "relation_to_type": "type", "validated": true, "ani": 79.4975, "matched_fragments": 486, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sphaeroides", "strain": "strain=2.4.1", "accession": "GCA_000273405.1", "taxid": 1063, "species_taxid": 1063, "relation_to_type": "type", "validated": true, "ani": 79.4171, "matched_fragments": 522, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sphaeroides", "strain": "strain=NBRC 12203", "accession": "GCA_007991035.1", "taxid": 1063, "species_taxid": 1063, "relation_to_type": "type", "validated": true, "ani": 79.416, "matched_fragments": 517, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sphaeroides", "strain": "strain=2.4.1", "accession": "GCA_003324715.1", "taxid": 1063, "species_taxid": 1063, "relation_to_type": "type", "validated": true, "ani": 79.398, "matched_fragments": 524, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus mutanolyticus", "strain": "strain=RSP-02", "accession": "GCA_003285265.1", "taxid": 1499308, "species_taxid": 1499308, "relation_to_type": "type", "validated": true, "ani": 79.179, "matched_fragments": 463, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus halophilus", "strain": "strain=CGMCC 1.6117", "accession": "GCA_900111785.1", "taxid": 376733, "species_taxid": 376733, "relation_to_type": "type", "validated": true, "ani": 79.1161, "matched_fragments": 472, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus halophilus", "strain": "strain=JCM 14014", "accession": "GCA_000763905.1", "taxid": 376733, "species_taxid": 376733, "relation_to_type": "type", "validated": true, "ani": 79.0568, "matched_fragments": 473, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter aggregans", "strain": "strain=D1-19", "accession": "GCA_003075525.1", "taxid": 404875, "species_taxid": 404875, "relation_to_type": "type", "validated": true, "ani": 79.0405, "matched_fragments": 522, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter aggregans", "strain": "strain=DSM 18938", "accession": "GCA_003054005.1", "taxid": 404875, "species_taxid": 404875, "relation_to_type": "type", "validated": true, "ani": 79.0075, "matched_fragments": 514, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 78.5365, "matched_fragments": 472, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax lentus", "strain": "strain=DSM 29430", "accession": "GCA_900156805.1", "taxid": 633194, "species_taxid": 633194, "relation_to_type": "type", "validated": true, "ani": 78.2375, "matched_fragments": 455, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900156695.1", 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80.1715, "matched_fragments": 586, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Frigidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002358085.1", "gtdb_species": "s__Thioclava arenosa", "ani": 80.1354, "matched_fragments": 519, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thioclava", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000737065.1", "gtdb_species": "s__Thioclava atlantica", "ani": 80.1155, "matched_fragments": 542, 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