{
    "type": "genome",
    "identifier": "GCF_900156705.1",
    "organism": "Salimicrobium salexigens",
    "title": "Salimicrobium salexigens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900156705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05421758",
        "wgs_master": "FTOK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "908941",
        "species_taxid": "908941",
        "organism_name": "Salimicrobium salexigens",
        "infraspecific_name": "strain=DSM 22782",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/14",
        "asm_name": "IMG-taxon 2681813520 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900156705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/705/GCF_900156705.1_IMG-taxon_2681813520_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2584100",
        "genome_size_ungapped": "2583693",
        "gc_percent": "47.000000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900156705.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "2684",
        "protein_coding_gene_count": "2587",
        "non_coding_gene_count": "77",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-14",
    "dateModified": "2017-01-14",
    "datePublished": "2017-01-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Salimicrobium salexigens"
        ],
        "sample_taxid": [
            "908941"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.737 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2584100",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "444463",
        "N50 (bp)": "265111",
        "Gap Ratio (%)": "0.015750",
        "GCcontent (%)": "46.8",
        "Number of CDSs": "2603",
        "Average Protein Length": "291.2",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Salimicrobium jeotgali",
                "strain": "strain=MJ3",
                "accession": "GCA_000299295.2",
                "taxid": 1230341,
                "species_taxid": 1230341,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.67,
                "matched_fragments": 763,
                "total_fragments": 842,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salimicrobium jeotgali",
                "strain": "strain=MJ3",
                "accession": "GCA_001685435.3",
                "taxid": 1230341,
                "species_taxid": 1230341,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.645,
                "matched_fragments": 773,
                "total_fragments": 842,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salimicrobium humidisoli",
                "strain": "strain=WN024",
                "accession": "GCA_002295105.1",
                "taxid": 2029857,
                "species_taxid": 2029857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.6467,
                "matched_fragments": 775,
                "total_fragments": 842,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salimicrobium flavidum",
                "strain": "strain=DSM 23127",
                "accession": "GCA_900156645.1",
                "taxid": 570947,
                "species_taxid": 570947,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6888,
                "matched_fragments": 309,
                "total_fragments": 842,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salimicrobium halophilum",
                "strain": "strain=DSM 4771",
                "accession": "GCA_900100295.1",
                "taxid": 86666,
                "species_taxid": 86666,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3491,
                "matched_fragments": 291,
                "total_fragments": 842,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobacillus massiliensis",
                "strain": "strain=Marseille-P3554",
                "accession": "GCA_900166625.1",
                "taxid": 1926286,
                "species_taxid": 1926286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1538,
                "matched_fragments": 50,
                "total_fragments": 842,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900107115.1",
                "gtdb_species": "s__Salimicrobium album",
                "ani": 98.6987,
                "matched_fragments": 780,
                "total_fragments": 842,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Salimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002295105.1",
                "gtdb_species": "s__Salimicrobium sp002295105",
                "ani": 94.624,
                "matched_fragments": 776,
                "total_fragments": 842,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Salimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "98.33",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900156645.1",
                "gtdb_species": "s__Salimicrobium flavidum",
                "ani": 78.6889,
                "matched_fragments": 310,
                "total_fragments": 842,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Salimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900100295.1",
                "gtdb_species": "s__Salimicrobium halophilum",
                "ani": 78.3697,
                "matched_fragments": 291,
                "total_fragments": 842,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Salimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004684905.1",
                "gtdb_species": "s__Halobacillus salinus",
                "ani": 77.4161,
                "matched_fragments": 56,
                "total_fragments": 842,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009856415.1",
                "gtdb_species": "s__Halobacillus litoralis_C",
                "ani": 77.3582,
                "matched_fragments": 60,
                "total_fragments": 842,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000496835.1",
                "gtdb_species": "s__Thalassobacillus devorans_B",
                "ani": 77.331,
                "matched_fragments": 53,
                "total_fragments": 842,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Thalassobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000469135.2",
                "gtdb_species": "s__Halobacillus sp001592845",
                "ani": 76.8314,
                "matched_fragments": 74,
                "total_fragments": 842,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "99.19",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.071,
        "cell_length": 0.44,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 35.25,
        "optimum_ph": 7.625,
        "genome_size": 2584100.0,
        "gc_content": 46.307,
        "coding_genes": 2707.333,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 70.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Salimicrobium",
        "salexigens"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}