{
    "type": "genome",
    "identifier": "GCF_900156755.1",
    "organism": "Alicyclobacillus vulcanalis",
    "title": "Alicyclobacillus vulcanalis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900156755.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05421799",
        "wgs_master": "FTOO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "252246",
        "species_taxid": "252246",
        "organism_name": "Alicyclobacillus vulcanalis",
        "infraspecific_name": "strain=DSM 16176",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/14",
        "asm_name": "IMG-taxon 2681813550 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900156755.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/755/GCF_900156755.1_IMG-taxon_2681813550_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2994480",
        "genome_size_ungapped": "2993513",
        "gc_percent": "62.000000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900156755.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "2968",
        "protein_coding_gene_count": "2856",
        "non_coding_gene_count": "72",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-14",
    "dateModified": "2017-01-14",
    "datePublished": "2017-01-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alicyclobacillus vulcanalis"
        ],
        "sample_taxid": [
            "252246"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.842 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2994480",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "468885",
        "N50 (bp)": "208354",
        "Gap Ratio (%)": "0.032293",
        "GCcontent (%)": "61.9",
        "Number of CDSs": "2909",
        "Average Protein Length": "303.9",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "5",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Alicyclobacillus vulcanalis",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
                "organism_name": "Alicyclobacillus acidocaldarius subsp. acidocaldarius",
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                "species_taxid": 405212,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alicyclobacillus sendaiensis",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alicyclobacillus fructus",
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                "species_taxid": 2816082,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Alicyclobacillus mali",
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                "species_taxid": 1123961,
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                "ani": 81.9001,
                "matched_fragments": 690,
                "total_fragments": 981,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alicyclobacillus sacchari",
                "strain": "strain=DSM 17974",
                "accession": "GCA_004366795.1",
                "taxid": 392010,
                "species_taxid": 392010,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alicyclobacillus macrosporangiidus",
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                "accession": "GCA_900116805.1",
                "taxid": 392015,
                "species_taxid": 392015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7752,
                "matched_fragments": 106,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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                "accession": "GCF_900156755.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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        "cell_length": 0.301,
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        "mesophilic_range_tmp": 0.0,
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    "_genome_taxon": [
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        "vulcanalis"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}