{ "type": "genome", "identifier": "GCF_900156815.1", "organism": "Gemmobacter megaterium", "title": "Gemmobacter megaterium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900156815.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421774", "wgs_master": "FTOT00000000.1", "refseq_category": "reference genome", "taxid": "1086013", "species_taxid": "1086013", "organism_name": "Gemmobacter megaterium", "infraspecific_name": "strain=DSM 26375", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/14", "asm_name": "IMG-taxon 2681813556 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900156815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/815/GCF_900156815.1_IMG-taxon_2681813556_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4168088", "genome_size_ungapped": "4168088", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900156815.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4084", "protein_coding_gene_count": "4002", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-14", "dateModified": "2017-01-14", "datePublished": "2017-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmobacter megaterium" ], "sample_taxid": [ "1086013" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.147 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4168088", "Number of Sequences": "45", "Longest Sequences (bp)": "930678", "N50 (bp)": "436031", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.9", "Number of CDSs": "4026", "Average Protein Length": "313.2", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gemmobacter megaterium", "strain": "strain=DSM 26375", "accession": "GCA_900156815.1", "taxid": 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"below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": "strain=DJC", "accession": "GCA_003443995.1", "taxid": 2305252, "species_taxid": 2305252, "relation_to_type": "type", "validated": true, "ani": 78.4002, "matched_fragments": 457, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter straminiformis", "strain": "strain=CAM-8", "accession": "GCA_014243445.1", "taxid": 2045119, "species_taxid": 2045119, "relation_to_type": "type", "validated": true, "ani": 78.3971, "matched_fragments": 374, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola sediminis", "strain": "strain=DRYC-M-16", "accession": "GCA_004745575.1", "taxid": 2486418, "species_taxid": 2486418, "relation_to_type": "type", "validated": true, "ani": 78.2658, "matched_fragments": 414, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter aggregans", "strain": "strain=DSM 18938", "accession": "GCA_003054005.1", "taxid": 404875, "species_taxid": 404875, "relation_to_type": "type", "validated": true, "ani": 78.1415, "matched_fragments": 429, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter aggregans", "strain": "strain=D1-19", "accession": "GCA_003075525.1", "taxid": 404875, "species_taxid": 404875, "relation_to_type": "type", "validated": true, "ani": 78.1367, "matched_fragments": 433, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aminovorans", "strain": "strain=DSM 8537", "accession": "GCA_900113565.1", "taxid": 34004, "species_taxid": 34004, "relation_to_type": "type", "validated": true, "ani": 78.1028, "matched_fragments": 371, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 78.07, "matched_fragments": 383, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquarius", "strain": "strain=HYN0069", "accession": "GCA_003060865.1", "taxid": 2169400, "species_taxid": 2169400, "relation_to_type": "type", "validated": true, "ani": 77.8756, "matched_fragments": 355, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter tilapiae", "strain": "strain=KCTC 23310", "accession": "GCA_014652215.1", "taxid": 875041, "species_taxid": 875041, "relation_to_type": "type", "validated": true, "ani": 77.553, "matched_fragments": 292, "total_fragments": 1367, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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