{ "type": "genome", "identifier": "GCF_900156825.1", "organism": "Chryseobacterium gambrini", "title": "Chryseobacterium gambrini", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900156825.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421785", "wgs_master": "FTOV00000000.1", "refseq_category": "na", "taxid": "373672", "species_taxid": "373672", "organism_name": "Chryseobacterium gambrini", "infraspecific_name": "strain=DSM 18014", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/15", "asm_name": "IMG-taxon 2681813561 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900156825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/825/GCF_900156825.1_IMG-taxon_2681813561_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4841687", "genome_size_ungapped": "4841687", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "51", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900156825.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4471", "protein_coding_gene_count": "4359", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-15", "dateModified": "2017-01-15", "datePublished": "2017-01-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium gambrini" ], "sample_taxid": [ "373672" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.348 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4841687", "Number of Sequences": "51", "Longest Sequences (bp)": "767218", "N50 (bp)": "322040", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.1", "Number of CDSs": "4325", "Average Protein Length": "319.6", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "74", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium gambrini", "strain": "strain=DSM 18014", "accession": "GCA_900156825.1", "taxid": 373672, "species_taxid": 373672, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1586, "total_fragments": 1587, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Chryseobacterium mucoviscidosis", "strain": "strain=VT16-26", "accession": "GCA_002177115.1", "taxid": 1945581, "species_taxid": 1945581, "relation_to_type": "type", "validated": true, "ani": 95.1494, "matched_fragments": 1243, "total_fragments": 1587, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Chryseobacterium hispalense", "strain": "strain=DSM 25574", "accession": "GCA_000708615.2", "taxid": 1453492, "species_taxid": 1453492, "relation_to_type": "type", "validated": true, "ani": 83.1824, "matched_fragments": 896, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium arachidis", "strain": "strain=DSM 27619", "accession": "GCA_900129245.1", "taxid": 1416778, "species_taxid": 1416778, "relation_to_type": "type", "validated": true, "ani": 82.789, "matched_fragments": 945, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 82.303, "matched_fragments": 980, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taichungense", "strain": "strain=DSM 17453", "accession": "GCA_900109935.1", "taxid": 295069, "species_taxid": 295069, "relation_to_type": "type", "validated": true, "ani": 82.1247, "matched_fragments": 832, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium wanjuense", "strain": "strain=DSM 17724", "accession": "GCA_900111495.1", "taxid": 356305, "species_taxid": 356305, "relation_to_type": "type", "validated": true, "ani": 82.108, "matched_fragments": 888, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium daeguense", "strain": "strain=DSM 19388", "accession": "GCA_000430825.1", "taxid": 412438, "species_taxid": 412438, "relation_to_type": "type", "validated": true, "ani": 82.0598, "matched_fragments": 856, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium takakiae", "strain": "strain=DSM 26898", "accession": "GCA_900129385.1", "taxid": 1302685, "species_taxid": 1302685, "relation_to_type": "type", "validated": true, "ani": 82.0134, "matched_fragments": 878, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taeanense", "strain": "strain=DSM 17071", "accession": "GCA_900099685.1", "taxid": 311334, "species_taxid": 311334, "relation_to_type": "type", "validated": true, "ani": 81.6938, "matched_fragments": 794, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium geocarposphaerae", "strain": "strain=DSM 27617", "accession": "GCA_002797535.1", "taxid": 1416776, "species_taxid": 1416776, "relation_to_type": "type", "validated": true, "ani": 81.6367, "matched_fragments": 774, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 81.505, "matched_fragments": 736, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 81.3744, "matched_fragments": 816, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium luteum", "strain": "strain=DSM 18605", "accession": "GCA_000737785.1", "taxid": 421531, "species_taxid": 421531, "relation_to_type": "type", "validated": true, "ani": 80.0314, "matched_fragments": 711, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 79.9974, "matched_fragments": 676, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.1755, "matched_fragments": 476, "total_fragments": 1587, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900156825.1", "gtdb_species": "s__Chryseobacterium gambrini", "ani": 100.0, "matched_fragments": 1586, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.1494, "mean_intra_species_ani": "96.49", "min_intra_species_ani": "96.36", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_002177115.1", "gtdb_species": "s__Chryseobacterium mucoviscidosis", "ani": 95.1494, "matched_fragments": 1243, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.1494, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "95.97", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.75", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_018603435.1", "gtdb_species": "s__Chryseobacterium sp013153155", "ani": 92.5076, "matched_fragments": 1252, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.28", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000708615.2", "gtdb_species": "s__Chryseobacterium hispalense", "ani": 83.1815, "matched_fragments": 895, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "98.96", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900129245.1", "gtdb_species": "s__Chryseobacterium arachidis", "ani": 82.7674, "matched_fragments": 948, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000799195.1", "gtdb_species": "s__Chryseobacterium sp000799195", "ani": 82.3324, "matched_fragments": 968, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109935.1", "gtdb_species": "s__Chryseobacterium taichungense", "ani": 82.1329, "matched_fragments": 831, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900111495.1", "gtdb_species": "s__Chryseobacterium wanjuense", "ani": 82.1051, "matched_fragments": 888, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000430825.1", "gtdb_species": "s__Chryseobacterium daeguense", "ani": 82.0795, "matched_fragments": 855, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129385.1", "gtdb_species": "s__Chryseobacterium takakiae", "ani": 82.0023, "matched_fragments": 879, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900156075.1", "gtdb_species": "s__Chryseobacterium sp900156075", "ani": 81.71, "matched_fragments": 697, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900099685.1", "gtdb_species": "s__Chryseobacterium taeanense", "ani": 81.6603, "matched_fragments": 798, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001456155.1", "gtdb_species": "s__Chryseobacterium sp001456155", "ani": 81.6571, "matched_fragments": 798, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002797535.1", "gtdb_species": "s__Chryseobacterium geocarposphaerae", "ani": 81.6427, "matched_fragments": 773, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.65", "min_intra_species_ani": "95.65", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000333355.1", "gtdb_species": "s__Chryseobacterium sp000333355", "ani": 81.4049, "matched_fragments": 657, "total_fragments": 1587, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.041, "cell_length": 0.556, "doubling_h": null, "growth_tmp": 29.0, "optimum_tmp": 27.875, "optimum_ph": 6.92, "genome_size": 4841687.0, "gc_content": 39.236, "coding_genes": 3717.633, "rRNA16S_genes": 4.75, "tRNA_genes": 64.066, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chryseobacterium", "gambrini" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }