{ "type": "genome", "identifier": "GCF_900156835.1", "organism": "Paracoccus saliphilus", "title": "Paracoccus saliphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900156835.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421772", "wgs_master": "FTOU00000000.1", "refseq_category": "na", "taxid": "405559", "species_taxid": "405559", "organism_name": "Paracoccus saliphilus", "infraspecific_name": "strain=DSM 18447", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/15", "asm_name": "IMG-taxon 2681813562 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900156835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/156/835/GCF_900156835.1_IMG-taxon_2681813562_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4570660", "genome_size_ungapped": "4570496", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "55", "contig_count": "55", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900156835.1-RS_2024_07_17", "annotation_date": "2024-07-17", "total_gene_count": "4446", "protein_coding_gene_count": "4306", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-15", "dateModified": "2017-01-15", "datePublished": "2017-01-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus saliphilus" ], "sample_taxid": [ "405559" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang province, edge of Ebinur Lake wetland natural reserve" ], "sample_host_location_id": [], "data_size": "1.280 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4570660", "Number of Sequences": "55", "Longest Sequences (bp)": "711894", "N50 (bp)": "210104", "Gap Ratio (%)": "0.003588", "GCcontent (%)": "61.1", "Number of CDSs": "4366", "Average Protein Length": "310.8", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus onubensis", "strain": 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79.7772, "matched_fragments": 568, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 79.7615, "matched_fragments": 548, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus tibetensis", "strain": "strain=CGMCC 1.8925", "accession": "GCA_900102505.1", "taxid": 336292, "species_taxid": 336292, "relation_to_type": "type", "validated": true, "ani": 79.6145, "matched_fragments": 527, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus indicus", "strain": "strain=IO390502", "accession": "GCA_003056335.1", "taxid": 2079229, "species_taxid": 2079229, "relation_to_type": "type", "validated": true, "ani": 79.6119, "matched_fragments": 533, "total_fragments": 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