{ "type": "genome", "identifier": "GCF_900162645.1", "organism": "Vibrio palustris", "title": "Vibrio palustris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900162645.1", "bioproject": "PRJNA224116", "biosample": "SAMEA26629168", "wgs_master": "FUFT00000000.1", "refseq_category": "na", "taxid": "1918946", "species_taxid": "1918946", "organism_name": "Vibrio palustris", "infraspecific_name": "strain=CECT 9027T", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/02/07", "asm_name": "V_palustris_CECT9027T_Velvet_Prokka_EMBL", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900162645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/162/645/GCF_900162645.1_V_palustris_CECT9027T_Velvet_Prokka_EMBL", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3701013", "genome_size_ungapped": "3701013", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900162645.1-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "3442", "protein_coding_gene_count": "3284", "non_coding_gene_count": "122", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-02-07", "dateModified": "2017-02-07", "datePublished": "2017-02-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio palustris" ], "sample_taxid": [ "1918946" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "1.057 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3701013", "Number of Sequences": "25", "Longest Sequences (bp)": "1083010", "N50 (bp)": "1061100", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.4", "Number of CDSs": "3326", "Average Protein Length": "317.8", "Coding Ratio (%)": "85.7", "Number of rRNAs": "11", "Number of tRNAs": "89", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio palustris", "strain": "strain=CECT 9027", "accession": "GCA_900162645.1", "taxid": 1918946, "species_taxid": 1918946, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1222, "total_fragments": 1222, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio palustris", "strain": "strain=CECT 9027", "accession": "GCA_024346995.1", "taxid": 1918946, "species_taxid": 1918946, "relation_to_type": "type", "validated": true, "ani": 99.9996, "matched_fragments": 1218, "total_fragments": 1222, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio zhugei", "strain": "strain=HBUAS61001", "accession": "GCA_003716875.1", "taxid": 2479546, "species_taxid": 2479546, "relation_to_type": "type", "validated": true, "ani": 82.2621, "matched_fragments": 766, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio zhugei", "strain": "strain=KCTC 62784", "accession": "GCA_024347155.1", "taxid": 2479546, "species_taxid": 2479546, "relation_to_type": "type", "validated": true, "ani": 82.2583, "matched_fragments": 779, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nitrifigilis", "strain": "strain=NFV-1", "accession": "GCA_015686695.1", "taxid": 2789781, "species_taxid": 2789781, "relation_to_type": "type", "validated": true, "ani": 79.3569, "matched_fragments": 340, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio celticus", "strain": "strain=CECT 7224", "accession": "GCA_024347335.1", "taxid": 446372, "species_taxid": 446372, "relation_to_type": "type", "validated": true, "ani": 79.0103, "matched_fragments": 164, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tritonius", "strain": "strain=JCM 16456", "accession": "GCA_001547935.1", "taxid": 1435069, "species_taxid": 1435069, "relation_to_type": "type", "validated": true, "ani": 78.9234, "matched_fragments": 331, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio crassostreae", "strain": "strain=LMG 22240", "accession": "GCA_024347415.1", "taxid": 246167, "species_taxid": 246167, "relation_to_type": "type", "validated": true, "ani": 78.757, "matched_fragments": 167, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio qinghaiensis", "strain": "strain=Q67", "accession": "GCA_002257545.1", "taxid": 2025808, "species_taxid": 2025808, "relation_to_type": "type", "validated": true, "ani": 78.6032, "matched_fragments": 194, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio proteolyticus", "strain": "strain=NBRC 13287", "accession": "GCA_000467125.1", "taxid": 671, "species_taxid": 671, "relation_to_type": "type", "validated": true, "ani": 78.5559, "matched_fragments": 170, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000222665.2", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", 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