{ "type": "genome", "identifier": "GCF_900163655.1", "organism": "Brachybacterium nesterenkovii", "title": "Brachybacterium nesterenkovii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "MICALIS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900163655.1", "bioproject": "PRJNA224116", "biosample": "SAMEA80386918", "wgs_master": "FWFG00000000.1", "refseq_category": "reference genome", "taxid": "47847", "species_taxid": "47847", "organism_name": "Brachybacterium nesterenkovii", "infraspecific_name": "strain=CIP104813", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/29", "asm_name": "ASM90016365v1", "asm_submitter": "MICALIS", "gbrs_paired_asm": "GCA_900163655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/163/655/GCF_900163655.1_ASM90016365v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3021972", "genome_size_ungapped": "3021972", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "119", "contig_count": "119", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900163655.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2743", "protein_coding_gene_count": "2627", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-29", "dateModified": "2017-04-29", "datePublished": "2017-04-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Brachybacterium nesterenkovii" ], "sample_taxid": [ "47847" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Ukraine" ], "sample_host_location_id": [], "data_size": "0.804 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3021972", "Number of Sequences": "119", "Longest Sequences (bp)": "170008", "N50 (bp)": "49972", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.4", "Number of CDSs": "2653", "Average Protein Length": "329.7", "Coding Ratio (%)": "86.8", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brachybacterium nesterenkovii", "strain": "strain=CIP104813", "accession": "GCA_900163655.1", "taxid": 47847, "species_taxid": 47847, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 941, "total_fragments": 947, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brachybacterium aquaticum", "strain": "strain=DSM 28796", "accession": "GCA_014204755.1", "taxid": 1432564, "species_taxid": 1432564, "relation_to_type": "type", "validated": true, "ani": 81.1218, "matched_fragments": 540, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium halotolerans subsp. kimchii", "strain": "strain=CBA3105", "accession": "GCA_020792675.1", "taxid": 2887346, "species_taxid": 2795215, "relation_to_type": "type", "validated": true, "ani": 80.9641, "matched_fragments": 554, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium squillarum", "strain": "strain=M-6-3", "accession": "GCA_000225825.2", "taxid": 661979, "species_taxid": 661979, "relation_to_type": "type", "validated": true, "ani": 80.9339, "matched_fragments": 528, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium halotolerans", "strain": "strain=MASK1Z-5", "accession": "GCA_016623465.1", "taxid": 2795215, "species_taxid": 2795215, "relation_to_type": "type", "validated": true, "ani": 80.8779, "matched_fragments": 530, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium kimchii", "strain": "strain=CBA3104", "accession": "GCA_023373525.1", "taxid": 2942909, "species_taxid": 2942909, "relation_to_type": "type", "validated": true, "ani": 80.8708, "matched_fragments": 551, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium muris", "strain": "strain=DSM 15460", "accession": "GCA_016907455.1", "taxid": 219301, "species_taxid": 219301, "relation_to_type": "type", "validated": true, "ani": 80.8448, "matched_fragments": 488, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium subflavum", "strain": "strain=CFH 10395", "accession": "GCA_009299795.1", "taxid": 2585206, "species_taxid": 2585206, "relation_to_type": "type", "validated": true, "ani": 80.8087, "matched_fragments": 548, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium endophyticum", "strain": "strain=M1HQ-2", "accession": "GCA_003130585.1", "taxid": 2182385, "species_taxid": 2182385, "relation_to_type": "type", "validated": true, "ani": 80.6472, "matched_fragments": 468, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium epidermidis", "strain": "strain=Marseille-Q2903", "accession": "GCA_015209585.1", "taxid": 2781983, "species_taxid": 2781983, "relation_to_type": "type", "validated": true, "ani": 80.4444, "matched_fragments": 478, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium faecium", "strain": "strain=DSM 4810", "accession": "GCA_000023405.1", "taxid": 43669, "species_taxid": 43669, "relation_to_type": "type", "validated": true, "ani": 80.3496, "matched_fragments": 526, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium avium", "strain": "strain=VR2415", "accession": "GCA_002216795.1", "taxid": 2017485, "species_taxid": 2017485, "relation_to_type": "type", "validated": true, "ani": 79.6169, "matched_fragments": 460, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 77.0422, "matched_fragments": 277, "total_fragments": 947, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella glacieicola", "strain": "strain=T3246-1", "accession": "GCA_004353825.1", "taxid": 2518684, "species_taxid": 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