{
    "type": "genome",
    "identifier": "GCF_900166635.1",
    "organism": "Oceanobacillus timonensis",
    "title": "Oceanobacillus timonensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900166635.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA89867668",
        "wgs_master": "FVZA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1926285",
        "species_taxid": "1926285",
        "organism_name": "Oceanobacillus timonensis",
        "infraspecific_name": "strain=Marseille-P3532",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/03/24",
        "asm_name": "PRJEB19430",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900166635.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/166/635/GCF_900166635.1_PRJEB19430",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4485339",
        "genome_size_ungapped": "4483324",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "7",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900166635.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "4364",
        "protein_coding_gene_count": "4228",
        "non_coding_gene_count": "92",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-03-24",
    "dateModified": "2017-03-24",
    "datePublished": "2017-03-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oceanobacillus timonensis"
        ],
        "sample_taxid": [
            "1926285"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.265 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4485339",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "4430231",
        "N50 (bp)": "4430231",
        "Gap Ratio (%)": "0.044969",
        "GCcontent (%)": "38.8",
        "Number of CDSs": "4360",
        "Average Protein Length": "285.3",
        "Coding Ratio (%)": "83.2",
        "Number of rRNAs": "15",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Oceanobacillus timonensis",
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                "accession": "GCA_900166635.1",
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                "species_taxid": 1926285,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1494,
                "total_fragments": 1494,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Oceanobacillus jeddahense",
                "strain": "strain=S5",
                "accession": "GCA_000750635.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9658,
                "matched_fragments": 953,
                "total_fragments": 1494,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus neutriphilus",
                "strain": "strain=CGMCC 1.7693",
                "accession": "GCA_014645515.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus sojae",
                "strain": "strain=NBRC 105379",
                "accession": "GCA_007991515.1",
                "taxid": 582851,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8728,
                "matched_fragments": 845,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus iheyensis",
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                "accession": "GCA_000011245.1",
                "taxid": 182710,
                "species_taxid": 182710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.336,
                "matched_fragments": 177,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus zhaokaii",
                "strain": "strain=160",
                "accession": "GCA_003352005.1",
                "taxid": 2052660,
                "species_taxid": 2052660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1794,
                "matched_fragments": 116,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus kimchii",
                "strain": "strain=X50",
                "accession": "GCA_000340475.1",
                "taxid": 746691,
                "species_taxid": 746691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.948,
                "matched_fragments": 191,
                "total_fragments": 1494,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus salinisoli",
                "strain": "strain=YIM B00359",
                "accession": "GCA_009733865.1",
                "taxid": 2678611,
                "species_taxid": 2678611,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1653,
                "matched_fragments": 93,
                "total_fragments": 1494,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Virgibacillus natechei",
                "strain": "strain=DSM 25609",
                "accession": "GCA_017874115.1",
                "taxid": 1216297,
                "species_taxid": 1216297,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0187,
                "matched_fragments": 86,
                "total_fragments": 1494,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus arenosus",
                "strain": "strain=CAU 1183",
                "accession": "GCA_003369575.1",
                "taxid": 1229153,
                "species_taxid": 1229153,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.827,
                "matched_fragments": 86,
                "total_fragments": 1494,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_900166635.1",
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                "matched_fragments": 1494,
                "total_fragments": 1494,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000750635.1",
                "gtdb_species": "s__Oceanobacillus jeddahense",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
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                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
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                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000821065.1",
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                "mean_intra_species_ani": "98.79",
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                "num_clustered_genomes": 3,
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            },
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                "mean_intra_species_ani": "N/A",
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            },
            {
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            },
            {
                "accession": "GCF_018333215.1",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "timonensis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}