{
    "type": "genome",
    "identifier": "GCF_900167005.1",
    "organism": "Butyricicoccus pullicaecorum DSM 23266",
    "title": "Butyricicoccus pullicaecorum DSM 23266",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900167005.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02745978",
        "wgs_master": "FUXW00000000.1",
        "refseq_category": "na",
        "taxid": "1121128",
        "species_taxid": "501571",
        "organism_name": "Butyricicoccus pullicaecorum DSM 23266",
        "infraspecific_name": "strain=DSM 23266",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/03/04",
        "asm_name": "IMG-taxon 2585428076 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900167005.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/005/GCF_900167005.1_IMG-taxon_2585428076_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3270841",
        "genome_size_ungapped": "3268950",
        "gc_percent": "54.000000",
        "replicon_count": "0",
        "scaffold_count": "35",
        "contig_count": "35",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-04",
        "total_gene_count": "3201",
        "protein_coding_gene_count": "3102",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-03-04",
    "dateModified": "2017-03-04",
    "datePublished": "2017-03-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Butyricicoccus pullicaecorum DSM 23266"
        ],
        "sample_taxid": [
            "1121128"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Belgium: Maldegem"
        ],
        "sample_host_location_id": [],
        "data_size": "0.926 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3270841",
        "Number of Sequences": "35",
        "Longest Sequences (bp)": "812047",
        "N50 (bp)": "435266",
        "Gap Ratio (%)": "0.057814",
        "GCcontent (%)": "54.1",
        "Number of CDSs": "3140",
        "Average Protein Length": "303.3",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Butyricicoccus pullicaecorum",
                "strain": "strain=DSM 23266",
                "accession": "GCA_900167005.1",
                "taxid": 501571,
                "species_taxid": 501571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1069,
                "total_fragments": 1073,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Faecalibacterium gallinarum",
                "strain": "strain=JCM 17207",
                "accession": "GCA_022180365.1",
                "taxid": 2903556,
                "species_taxid": 2903556,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0319,
                "matched_fragments": 57,
                "total_fragments": 1073,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyricicoccus faecihominis",
                "strain": "strain=JCM 31056",
                "accession": "GCA_016586375.1",
                "taxid": 1712515,
                "species_taxid": 1712515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8747,
                "matched_fragments": 188,
                "total_fragments": 1073,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyricicoccus faecihominis",
                "strain": "strain=JCM 31056",
                "accession": "GCA_014648015.1",
                "taxid": 1712515,
                "species_taxid": 1712515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8118,
                "matched_fragments": 188,
                "total_fragments": 1073,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agathobaculum desmolans",
                "strain": "strain=ATCC 43058",
                "accession": "GCA_000701665.1",
                "taxid": 39484,
                "species_taxid": 39484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0816,
                "matched_fragments": 150,
                "total_fragments": 1073,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinibacillus massiliensis",
                "strain": "strain=type strain: Marseille-P3216",
                "accession": "GCA_900155735.1",
                "taxid": 1871029,
                "species_taxid": 1871029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9605,
                "matched_fragments": 160,
                "total_fragments": 1073,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900167005.1",
                "gtdb_species": "s__Butyricicoccus pullicaecorum",
                "ani": 100.0,
                "matched_fragments": 1069,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Butyricicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.10",
                "min_intra_species_ani": "95.60",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCA_019119435.1",
                "gtdb_species": "s__Butyricicoccus avicola",
                "ani": 81.7394,
                "matched_fragments": 355,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Butyricicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900604335.1",
                "gtdb_species": "s__Butyricicoccus sp900604335",
                "ani": 80.5044,
                "matched_fragments": 255,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Butyricicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004552245.1",
                "gtdb_species": "s__Butyricicoccus sp004552245",
                "ani": 80.3629,
                "matched_fragments": 249,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Butyricicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900625105.1",
                "gtdb_species": "s__Agathobaculum sp900625105",
                "ani": 79.8524,
                "matched_fragments": 243,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018366195.1",
                "gtdb_species": "s__Butyricicoccus pullicaecorum_C",
                "ani": 79.0732,
                "matched_fragments": 191,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Butyricicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003096535.1",
                "gtdb_species": "s__Agathobaculum butyriciproducens",
                "ani": 79.0027,
                "matched_fragments": 208,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.66",
                "min_intra_species_ani": "95.68",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCA_018365995.1",
                "gtdb_species": "s__Butyricicoccus pullicaecorum_B",
                "ani": 78.998,
                "matched_fragments": 169,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Butyricicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018366035.1",
                "gtdb_species": "s__Butyricicoccus pullicaecorum_A",
                "ani": 78.8046,
                "matched_fragments": 189,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Butyricicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900547195.1",
                "gtdb_species": "s__Butyricicoccus sp900547195",
                "ani": 78.2951,
                "matched_fragments": 163,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Butyricicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.99",
                "min_intra_species_ani": "97.22",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_910584935.1",
                "gtdb_species": "s__Butyricicoccus sp910584935",
                "ani": 78.0106,
                "matched_fragments": 51,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Butyricicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900155735.1",
                "gtdb_species": "s__Intestinibacillus massiliensis",
                "ani": 77.9541,
                "matched_fragments": 161,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Intestinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": 0.079,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 42.0,
        "optimum_ph": 6.0,
        "genome_size": 3285179.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Butyricicoccus",
        "pullicaecorum",
        "DSM",
        "23266"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}