{ "type": "genome", "identifier": "GCF_900167025.1", "organism": "Treponema berlinense", "title": "Treponema berlinense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900167025.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745152", "wgs_master": "FUXC00000000.1", "refseq_category": "reference genome", "taxid": "225004", "species_taxid": "225004", "organism_name": "Treponema berlinense", "infraspecific_name": "strain=ATCC BAA-909", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/04", "asm_name": "IMG-taxon 2582581319 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900167025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/025/GCF_900167025.1_IMG-taxon_2582581319_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2521032", "genome_size_ungapped": "2519534", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900167025.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2246", "protein_coding_gene_count": "2168", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-04", "dateModified": "2017-03-04", "datePublished": "2017-03-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Treponema berlinense" ], "sample_taxid": [ "225004" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany:Berlin, Germany" ], "sample_host_location_id": [], "data_size": "0.702 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2521032", "Number of Sequences": "33", "Longest Sequences (bp)": "422927", "N50 (bp)": "162519", "Gap Ratio (%)": "0.059420", "GCcontent (%)": "39.4", "Number of CDSs": "2141", "Average Protein Length": "347.3", "Coding Ratio (%)": "88.5", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Treponema berlinense", "strain": "strain=ATCC BAA-909", "accession": "GCA_900167025.1", "taxid": 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