{
    "type": "genome",
    "identifier": "GCF_900167085.1",
    "organism": "Eubacterium ruminantium",
    "title": "Eubacterium ruminantium",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900167085.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02745110",
        "wgs_master": "FUXA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "42322",
        "species_taxid": "42322",
        "organism_name": "Eubacterium ruminantium",
        "infraspecific_name": "strain=ATCC 17233",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/03/04",
        "asm_name": "IMG-taxon 2585428142 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900167085.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/085/GCF_900167085.1_IMG-taxon_2585428142_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2841101",
        "genome_size_ungapped": "2840588",
        "gc_percent": "37.000000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900167085.1-RS_2024_04_12",
        "annotation_date": "2024-04-12",
        "total_gene_count": "2564",
        "protein_coding_gene_count": "2491",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-03-04",
    "dateModified": "2017-03-04",
    "datePublished": "2017-03-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Eubacterium ruminantium"
        ],
        "sample_taxid": [
            "42322"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.795 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2841101",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "334691",
        "N50 (bp)": "255420",
        "Gap Ratio (%)": "0.018056",
        "GCcontent (%)": "37.2",
        "Number of CDSs": "2495",
        "Average Protein Length": "337.3",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Eubacterium ruminantium",
                "strain": "strain=ATCC 17233",
                "accession": "GCA_900167085.1",
                "taxid": 42322,
                "species_taxid": 42322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 929,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Wujia chipingensis",
                "strain": "strain=NSJ-4",
                "accession": "GCA_014337155.1",
                "taxid": 2763670,
                "species_taxid": 2763670,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6448,
                "matched_fragments": 56,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_025149915.1",
                "taxid": 33043,
                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.4813,
                "matched_fragments": 62,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_000154425.1",
                "taxid": 33043,
                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.4368,
                "matched_fragments": 63,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium uniforme",
                "strain": "strain=ATCC 35992",
                "accession": "GCA_900167115.1",
                "taxid": 39495,
                "species_taxid": 39495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3649,
                "matched_fragments": 81,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ventriosum",
                "strain": "strain=ATCC 27560",
                "accession": "GCA_000153885.1",
                "taxid": 39496,
                "species_taxid": 39496,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.1485,
                "matched_fragments": 50,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio hungatei",
                "strain": "strain=DSM 14810",
                "accession": "GCA_900143205.1",
                "taxid": 185008,
                "species_taxid": 185008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1446,
                "matched_fragments": 66,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ventriosum",
                "strain": "strain=ATCC 27560",
                "accession": "GCA_025150745.1",
                "taxid": 39496,
                "species_taxid": 39496,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.0804,
                "matched_fragments": 53,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio proteoclasticus",
                "strain": "strain=B316",
                "accession": "GCA_000145035.1",
                "taxid": 43305,
                "species_taxid": 43305,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9871,
                "matched_fragments": 53,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lachnospira eligens",
                "strain": "strain=ATCC 27750",
                "accession": "GCA_000146185.1",
                "taxid": 39485,
                "species_taxid": 39485,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.7574,
                "matched_fragments": 57,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio crossotus",
                "strain": "strain=DSM 2876",
                "accession": "GCA_025148445.1",
                "taxid": 45851,
                "species_taxid": 45851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5822,
                "matched_fragments": 57,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio fibrisolvens",
                "strain": "strain=DSM 3071",
                "accession": "GCA_900129945.1",
                "taxid": 831,
                "species_taxid": 831,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.5805,
                "matched_fragments": 55,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio crossotus",
                "strain": "strain=DSM 2876",
                "accession": "GCA_000156015.1",
                "taxid": 45851,
                "species_taxid": 45851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4969,
                "matched_fragments": 56,
                "total_fragments": 930,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900167085.1",
                "gtdb_species": "s__Eubacterium_Q ruminantium",
                "ani": 100.0,
                "matched_fragments": 929,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "98.63",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900108205.1",
                "gtdb_species": "s__Eubacterium_Q ruminantium_A",
                "ani": 80.476,
                "matched_fragments": 327,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017430325.1",
                "gtdb_species": "s__Eubacterium_Q sp017430325",
                "ani": 79.7168,
                "matched_fragments": 266,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "98.28",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000702245.1",
                "gtdb_species": "s__Eubacterium_Q sp000702245",
                "ani": 79.6013,
                "matched_fragments": 252,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "97.61",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900321215.1",
                "gtdb_species": "s__Eubacterium_Q sp900321215",
                "ani": 79.0896,
                "matched_fragments": 232,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.10",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_003520105.1",
                "gtdb_species": "s__Eubacterium_Q sp003520105",
                "ani": 78.2965,
                "matched_fragments": 153,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017420535.1",
                "gtdb_species": "s__Eubacterium_Q sp017420535",
                "ani": 78.1326,
                "matched_fragments": 148,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017539165.1",
                "gtdb_species": "s__Eubacterium_Q sp017539165",
                "ani": 78.0437,
                "matched_fragments": 124,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902789175.1",
                "gtdb_species": "s__Eubacterium_Q sp902789175",
                "ani": 77.9332,
                "matched_fragments": 143,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017519155.1",
                "gtdb_species": "s__Eubacterium_Q sp017519155",
                "ani": 77.8628,
                "matched_fragments": 101,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900548215.1",
                "gtdb_species": "s__Coprococcus sp900548215",
                "ani": 76.879,
                "matched_fragments": 51,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.00",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002314775.1",
                "gtdb_species": "s__UBA1760 sp002314775",
                "ani": 76.8666,
                "matched_fragments": 67,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA1760",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002371025.1",
                "gtdb_species": "s__Eubacterium_Q sp002371025",
                "ani": 76.7691,
                "matched_fragments": 97,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902782695.1",
                "gtdb_species": "s__Eubacterium_Q sp902782695",
                "ani": 76.1687,
                "matched_fragments": 70,
                "total_fragments": 930,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.699,
        "cell_length": -0.097,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.071,
        "optimum_ph": null,
        "genome_size": 3025243.75,
        "gc_content": 41.131,
        "coding_genes": 3227.555,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 59.583,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Eubacterium",
        "ruminantium"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}