{ "type": "genome", "identifier": "GCF_900167155.1", "organism": "Enterovibrio nigricans DSM 22720", "title": "Enterovibrio nigricans DSM 22720", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900167155.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745132", "wgs_master": "FUXU00000000.1", "refseq_category": "reference genome", "taxid": "1121868", "species_taxid": "504469", "organism_name": "Enterovibrio nigricans DSM 22720", "infraspecific_name": "strain=DSM 22720", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/04", "asm_name": "IMG-taxon 2568526010 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900167155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/155/GCF_900167155.1_IMG-taxon_2568526010_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5037269", "genome_size_ungapped": "5035312", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "241", "contig_count": "241", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900167155.1-RS_2024_04_25", "annotation_date": "2024-04-25", "total_gene_count": "4845", "protein_coding_gene_count": "4532", "non_coding_gene_count": "104", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-04", "dateModified": "2017-03-04", "datePublished": "2017-03-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterovibrio nigricans DSM 22720" ], "sample_taxid": [ "1121868" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mediterranean Sea:Spanish Mediterranean coast" ], "sample_host_location_id": [], "data_size": "1.447 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5037269", "Number of Sequences": "241", "Longest Sequences (bp)": "197715", "N50 (bp)": "51454", "Gap Ratio (%)": "0.038850", "GCcontent (%)": "46.6", "Number of CDSs": "4630", "Average Protein Length": "308.3", "Coding Ratio (%)": "85.0", "Number of rRNAs": "9", "Number of tRNAs": "80", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterovibrio nigricans", "strain": "strain=DSM 22720", "accession": "GCA_900167155.1", "taxid": 504469, "species_taxid": 504469, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1542, "total_fragments": 1555, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Grimontia indica", "strain": "strain=AK16", "accession": "GCA_000333895.2", "taxid": 1056512, "species_taxid": 1056512, "relation_to_type": "type", "validated": true, "ani": 80.4973, "matched_fragments": 571, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia celer", "strain": "strain=CECT 9029", "accession": "GCA_900055185.1", "taxid": 1796497, "species_taxid": 1796497, "relation_to_type": "type", "validated": true, "ani": 80.467, "matched_fragments": 566, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia marina", "strain": "strain=CECT 8713", "accession": "GCA_900060185.1", "taxid": 646534, "species_taxid": 646534, "relation_to_type": "type", "validated": true, "ani": 80.4658, "matched_fragments": 556, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia sedimenti", "strain": "strain=S25", "accession": "GCA_011045095.1", "taxid": 2711294, "species_taxid": 2711294, "relation_to_type": "type", "validated": true, "ani": 80.4543, "matched_fragments": 553, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio baiacu", "strain": "strain=A649", "accession": "GCA_004120195.1", "taxid": 2491023, "species_taxid": 2491023, "relation_to_type": "type", "validated": true, "ani": 80.3474, "matched_fragments": 541, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio baiacu", "strain": "strain=A649", "accession": "GCA_014863865.1", "taxid": 2491023, "species_taxid": 2491023, "relation_to_type": "type", "validated": true, "ani": 80.3412, "matched_fragments": 542, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio calviensis", "strain": "strain=DSM 14347", "accession": "GCA_000621165.1", "taxid": 91359, "species_taxid": 91359, "relation_to_type": "type", "validated": true, "ani": 80.1819, "matched_fragments": 572, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio norvegicus", "strain": "strain=DSM 15893", "accession": "GCA_900115495.1", "taxid": 188144, "species_taxid": 188144, "relation_to_type": "type", "validated": true, "ani": 80.144, "matched_fragments": 525, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia hollisae", "strain": "strain=CIP 101886", "accession": "GCA_000176515.1", "taxid": 673, "species_taxid": 673, "relation_to_type": "type", "validated": true, "ani": 79.754, "matched_fragments": 471, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 78.018, "matched_fragments": 155, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio porteresiae", "strain": "strain=MSSRF30", "accession": "GCA_024347055.1", "taxid": 435912, "species_taxid": 435912, "relation_to_type": "type", "validated": true, "ani": 77.9392, "matched_fragments": 116, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium galatheae", "strain": "strain=DSM 100496", "accession": "GCA_023653475.1", "taxid": 1654360, "species_taxid": 1654360, "relation_to_type": "type", "validated": true, "ani": 77.9312, "matched_fragments": 146, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliivibrio fischeri", "strain": "strain=DSM 507", "accession": "GCA_023983475.1", "taxid": 668, "species_taxid": 668, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8809, "matched_fragments": 133, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rhizosphaerae", "strain": "strain=LMG 23790", "accession": "GCA_024347095.1", "taxid": 398736, "species_taxid": 398736, "relation_to_type": "type", "validated": true, "ani": 77.7792, "matched_fragments": 77, "total_fragments": 1555, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900167155.1", "gtdb_species": "s__Enterovibrio nigricans", "ani": 100.0, "matched_fragments": 1542, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Enterovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001559595.1", "gtdb_species": "s__Enterovibrio coralii", "ani": 83.3371, "matched_fragments": 990, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Enterovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000333895.2", "gtdb_species": "s__Enterovibrio indicus", "ani": 80.4929, "matched_fragments": 572, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Enterovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011045095.1", "gtdb_species": "s__Enterovibrio sedimenti", "ani": 80.4543, "matched_fragments": 553, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Enterovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004120195.1", "gtdb_species": "s__Enterovibrio baiacu", "ani": 80.3506, "matched_fragments": 540, "total_fragments": 1555, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Enterovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", 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