{
    "type": "genome",
    "identifier": "GCF_900167185.1",
    "organism": "Selenihalanaerobacter shriftii",
    "title": "Selenihalanaerobacter shriftii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900167185.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02745118",
        "wgs_master": "FUWM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "142842",
        "species_taxid": "142842",
        "organism_name": "Selenihalanaerobacter shriftii",
        "infraspecific_name": "strain=ATCC BAA-73",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/03/04",
        "asm_name": "IMG-taxon 2582581323 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900167185.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/185/GCF_900167185.1_IMG-taxon_2582581323_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2840584",
        "genome_size_ungapped": "2840564",
        "gc_percent": "31.500000",
        "replicon_count": "0",
        "scaffold_count": "54",
        "contig_count": "54",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900167185.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "2831",
        "protein_coding_gene_count": "2717",
        "non_coding_gene_count": "76",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-03-04",
    "dateModified": "2017-03-04",
    "datePublished": "2017-03-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Selenihalanaerobacter shriftii"
        ],
        "sample_taxid": [
            "142842"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.783 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2840584",
        "Number of Sequences": "54",
        "Longest Sequences (bp)": "284461",
        "N50 (bp)": "125861",
        "Gap Ratio (%)": "0.000704",
        "GCcontent (%)": "31.6",
        "Number of CDSs": "2722",
        "Average Protein Length": "302.4",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Selenihalanaerobacter shriftii",
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                "species_taxid": 142842,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 913,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fuchsiella alkaliacetigena",
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                "species_taxid": 957042,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natroniella sulfidigena",
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            },
            {
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                "species_taxid": 1413210,
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                "ani": 76.1293,
                "matched_fragments": 88,
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_023227745.1",
                "taxid": 52004,
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                "relation_to_type": "type",
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                "matched_fragments": 87,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Orenia marismortui",
                "strain": "strain=DSM 5156",
                "accession": "GCA_000379025.1",
                "taxid": 46469,
                "species_taxid": 46469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7141,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halonatronum saccharophilum",
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                "taxid": 150060,
                "species_taxid": 150060,
                "relation_to_type": "type",
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                "matched_fragments": 70,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halanaerobacter jeridensis",
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                "accession": "GCA_016908315.1",
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                "species_taxid": 706427,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halanaerobium praevalens",
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                "accession": "GCA_000165465.1",
                "taxid": 2331,
                "species_taxid": 2331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4238,
                "matched_fragments": 57,
                "total_fragments": 919,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
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        "gtdb_result": [
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                "accession": "GCF_900167185.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halobacteroidales;f__Acetohalobiaceae;g__Selenihalanaerobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halobacteroidales;f__Acetohalobiaceae;g__Frackibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.43",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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            },
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            },
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.222,
        "cell_length": 0.301,
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        "gc_content": null,
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        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
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    },
    "_genome_taxon": [
        "Selenihalanaerobacter",
        "shriftii"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}