{
    "type": "genome",
    "identifier": "GCF_900167205.1",
    "organism": "Eubacterium coprostanoligenes",
    "title": "Eubacterium coprostanoligenes",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900167205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02745114",
        "wgs_master": "FUWW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "290054",
        "species_taxid": "290054",
        "organism_name": "Eubacterium coprostanoligenes",
        "infraspecific_name": "strain=ATCC 51222",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/03/04",
        "asm_name": "IMG-taxon 2585428093 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900167205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/205/GCF_900167205.1_IMG-taxon_2585428093_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1823434",
        "genome_size_ungapped": "1823434",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "36",
        "contig_count": "36",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900167205.1-RS_2024_04_12",
        "annotation_date": "2024-04-12",
        "total_gene_count": "1721",
        "protein_coding_gene_count": "1652",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-03-04",
    "dateModified": "2017-03-04",
    "datePublished": "2017-03-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Eubacterium coprostanoligenes"
        ],
        "sample_taxid": [
            "290054"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Ames, IA, USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.512 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1823434",
        "Number of Sequences": "36",
        "Longest Sequences (bp)": "183304",
        "N50 (bp)": "91496",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.1",
        "Number of CDSs": "1653",
        "Average Protein Length": "330.3",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "5",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Eubacterium coprostanoligenes",
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                "accession": "GCA_900167205.1",
                "taxid": 290054,
                "species_taxid": 290054,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 589,
                "total_fragments": 592,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        },
        "gtdb_result": [
            {
                "accession": "GCF_900167205.1",
                "gtdb_species": "s__Eubacterium_R coprostanoligenes",
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                "matched_fragments": 589,
                "total_fragments": 592,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Eubacterium_R",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.02",
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                "mean_intra_species_af": "0.90",
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                "status": "conclusive"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Eubacterium_R",
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                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.34",
                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900766895.1",
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                "matched_fragments": 300,
                "total_fragments": 592,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Eubacterium_R",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900539165.1",
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                "matched_fragments": 268,
                "total_fragments": 592,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Eubacterium_R",
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                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900772705.1",
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                "total_fragments": 592,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Eubacterium_R",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900542875.1",
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                "ani": 79.2228,
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                "num_clustered_genomes": 6,
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            },
            {
                "accession": "GCA_003526845.1",
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                "total_fragments": 592,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Eubacterium_R",
                "ani_circumscription_radius": 95.0,
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            },
            {
                "accession": "GCA_002494125.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Eubacterium_R",
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                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.325,
        "cell_length": 0.215,
        "doubling_h": null,
        "growth_tmp": 37.0,
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        "optimum_ph": null,
        "genome_size": 1823434.0,
        "gc_content": 41.131,
        "coding_genes": 3227.555,
        "rRNA16S_genes": 6.0,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Eubacterium",
        "coprostanoligenes"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}