# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_5	LOCUS_00030	sequence02:1255..>2031(-)	partial			WP_011674781.1	ABC transporter ATP-binding protein	97.7	42.8	71.1
MGA_22	LOCUS_00150	sequence06:2346..2693(-)	partial			WP_002214977.1	type II toxin-antitoxin system PemK/MazF family toxin	71.3	69.2	34.1
MGA_27	LOCUS_00180	sequence07:665..787(-)	frameshift		547,670	WP_011241729.1	replication initiator protein A	97.5	10.6	92.3
MGA_39	LOCUS_00290	sequence08:10769..11227(-)	frameshift		10771	WP_011476274.1	LysR family transcriptional regulator	99.3	51.9	37.3
MGA_41	LOCUS_00310	sequence08:12939..13322(+)	frameshift		13310	WP_003641317.1	LysR family transcriptional regulator	90.6	38.3	38.3
MGA_57	LOCUS_00470	sequence08:30578..31279(+)	frameshift		31249	WP_002362058.1	amino acid permease	97.0	51.1	55.8
MGA_58	LOCUS_00480	sequence08:31336..31896(+)	frameshift		31255	WP_002362058.1	amino acid permease	96.8	41.0	59.1
MGA_65	LOCUS_00550	sequence08:35620..36312(-)	frameshift		36485	WP_003640791.1	ABC transporter substrate-binding protein/permease	99.1	47.3	62.9
MGA_66	LOCUS_00560	sequence08:36483..37088(-)	frameshift		36485	WP_003640791.1	ABC transporter substrate-binding protein/permease	97.0	40.1	50.0
MGA_85	LOCUS_00730	sequence09:19174..19503(-)	partial			WP_011222015.1	AAA family ATPase	89.0	36.5	63.9
MGA_86	LOCUS_00740	sequence09:19528..19800(-)	partial			WP_081512349.1	ISL3 family transposase	93.3	20.7	36.0
MGA_88	LOCUS_00760	sequence09:21364..21732(+)	frameshift		21914	WP_003646539.1	tyrosine-type recombinase/integrase	59.0	39.3	47.2
MGA_89	LOCUS_00770	sequence09:21729..21929(+)	frameshift		21915,21597	WP_011101297.1	tyrosine-type recombinase/integrase	69.7	23.6	60.9
MGA_106	LOCUS_00900	sequence11:12654..13160(+)	frameshift		13154	WP_003645914.1	hypothetical protein	88.1	54.1	55.6
MGA_107	LOCUS_00910	sequence11:13162..13500(+)	frameshift		13154	WP_003645914.1	hypothetical protein	97.3	38.5	45.0
MGA_112	LOCUS_00960	sequence11:16763..17263(-)	partial			WP_003642652.1	hypothetical protein	71.7	77.9	35.5
MGA_124	LOCUS_01080	sequence11:27902..28696(-)	internal_stop_codon	28766..28768(-)		WP_011101815.1	2-dehydropantoate 2-reductase	98.9	79.6	70.9
MGA_136	LOCUS_01200	sequence11:37421..37981(-)	frameshift,internal_stop_codon	37421..37423(-)	37417,37943	WP_003644494.1	MFS transporter	89.8	34.5	47.3
MGA_137	LOCUS_01210	sequence11:37908..38612(-)	frameshift		37943	WP_003644494.1	MFS transporter	93.2	45.0	52.3
MGA_159	LOCUS_01430	sequence11:64856..65281(-)	partial			WP_003642631.1	Hsp20/alpha crystallin family protein	66.0	65.5	53.8
MGA_170	LOCUS_01540	sequence12:684..863(-)	partial			WP_002262735.1	nitroreductase family protein	94.9	28.0	62.5
MGA_193	LOCUS_01770	sequence12:24189..24692(+)	partial			WP_011101020.1	DNA-directed RNA polymerase subunit delta	68.3	57.8	57.4
MGA_197	LOCUS_01810	sequence12:28240..29085(-)	partial			WP_010989527.1	DUF4097 domain-containing protein	52.3	39.1	29.5
MGA_227	LOCUS_02080	sequence14:7203..7853(+)	partial			WP_003238209.1	transcriptional repressor LexA	55.6	59.0	39.0
MGA_249	LOCUS_02290	sequence14:28912..29589(-)	partial			WP_011101662.1	helix-hairpin-helix domain-containing protein	79.1	71.8	46.1
MGA_257	LOCUS_02370	sequence14:35638..36492(-)	partial			WP_011101670.1	lactate dehydrogenase	76.1	70.3	33.5
MGA_277	LOCUS_02570	sequence14:54956..55237(-)	partial			WP_002355902.1	YggT family protein	69.9	78.8	53.7
MGA_281	LOCUS_02610	sequence14:58378..59181(-)	partial			WP_002286633.1	cell division protein FtsQ/DivIB	98.9	66.0	26.3
MGA_293	LOCUS_02730	sequence14:70375..70743(+)	frameshift		70737,70725	WP_003569480.1	copper homeostasis protein CutC	94.3	56.4	44.5
MGA_315	LOCUS_02940	sequence15:12936..14084(+)	partial			WP_004398674.1	isochorismate synthase MenF	66.5	53.3	36.9
MGA_316	LOCUS_02950	sequence15:14077..15009(+)	internal_stop_codon	15007..15009(+)		WP_010989780.1	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	94.8	52.4	39.5
MGA_317	LOCUS_02960	sequence15:15163..15741(+)	internal_stop_codon	15007..15009(+)		WP_010989780.1	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	91.7	31.0	48.3
MGA_318	LOCUS_02970	sequence15:15731..16090(+)	frameshift		16006	WP_012255997.1	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	85.7	37.8	33.0
MGA_319	LOCUS_02980	sequence15:16047..16529(+)	frameshift		16006	WP_000869224.1	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	93.1	55.2	39.6
MGA_331	LOCUS_03090	sequence16:9511..10080(-)	internal_stop_codon	10117..10119(-)		WP_002299522.1	serine hydrolase	94.2	42.8	36.0
MGA_332	LOCUS_03100	sequence16:10117..10830(-)	internal_stop_codon	10117..10119(-)		WP_011476403.1	D-alanyl-D-alanine carboxypeptidase family protein	90.3	53.9	37.9
MGA_416	LOCUS_03940	sequence16:86442..88106(+)	partial			WP_011101832.1	MMPL family transporter	89.9	56.2	25.7
MGA_446	LOCUS_04210	sequence18:18401..19108(-)	frameshift		19136	WP_003643926.1	DMT family transporter	95.7	65.7	50.7
MGA_447	LOCUS_04220	sequence18:19047..19349(-)	frameshift		19136	WP_003643926.1	DMT family transporter	71.0	20.8	60.6
MGA_489	LOCUS_04640	sequence18:61679..61975(-)	partial			WP_015379645.1	metalloregulator ArsR/SmtB family transcription factor	67.3	66.7	56.1
MGA_496	LOCUS_04710	sequence18:66998..67897(+)	partial			WP_011101804.1	MucBP domain-containing protein	15.7	5.1	51.1
MGA_509	LOCUS_04840	sequence18:77915..78097(+)	frameshift		78091	WP_011202637.1	carboxymuconolactone decarboxylase family protein	86.7	19.1	73.1
MGA_510	LOCUS_04850	sequence18:78106..78237(+)	frameshift		78079	WP_002296337.1	carboxymuconolactone decarboxylase family protein	100.0	37.7	60.5
MGA_515	LOCUS_04900	sequence18:82517..82801(+)	partial			WP_003231284.1	Zn(II)-responsive metalloregulatory transcriptional repressor CzrA	83.0	72.9	43.6
MGA_516	LOCUS_04910	sequence18:82970..83335(+)	internal_stop_codon	83603..83605(+),83333..83335(+)		WP_010892188.1	arginine/agmatine antiporter AaxC	100.0	24.9	35.5
MGA_518	LOCUS_04930	sequence18:83609..84328(+)	internal_stop_codon	83603..83605(+),83333..83335(+)		WP_010892188.1	arginine/agmatine antiporter AaxC	92.9	47.6	35.5
MGA_519	LOCUS_04940	sequence18:84571..85188(+)	partial			WP_000456640.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	99.0	49.6	51.7
MGA_521	LOCUS_04960	sequence18:86194..86733(-)	partial			WP_000514298.1	YSIRK-type signal peptide-containing protein	49.2	5.9	38.3
MGA_532	LOCUS_05060	sequence18:104286..105248(+)	partial			WP_011101160.1	bacterial Ig-like domain-containing protein	81.9	11.8	24.1
MGA_533	LOCUS_05070	sequence18:105297..109055(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	38.9	50.2	33.1
MGA_543	LOCUS_05170	sequence18:116058..116417(+)	internal_stop_codon	116010..116012(+)		WP_011475501.1	biotin transporter BioY	99.2	65.7	34.5
MGA_555	LOCUS_05280	sequence19:1477..1959(+)	frameshift		1947	WP_002485917.1	accessory Sec system translocase SecA2	89.4	18.0	50.3
MGA_556	LOCUS_05290	sequence19:2009..3841(+)	frameshift		1914	WP_011836745.1	accessory Sec system translocase SecA2	100.0	77.8	41.2
MGA_564	LOCUS_05370	sequence19:11454..12995(+)	partial			WP_000044547.1	serine-rich repeat glycoprotein adhesin SasA	95.7	19.9	24.5
MGA_571	LOCUS_05440	sequence19:20791..21171(+)	partial			WP_009924328.1	hypothetical protein	73.0	76.1	31.5
MGA_578	LOCUS_05510	sequence19:26414..27019(+)	partial			WP_002455926.1	helix-turn-helix transcriptional regulator	50.7	61.4	36.7
MGA_592	LOCUS_05650	sequence19:40042..44124(-)	partial			WP_011109529.1	BspA family leucine-rich repeat surface protein	28.8	34.7	29.3
MGA_596	LOCUS_05690	sequence19:49878..50474(-)	partial			WP_011101964.1	DNA/RNA non-specific endonuclease	88.4	56.4	35.8
MGA_620	LOCUS_05930	sequence19:75433..76392(+)	partial			WP_002936347.1	glycosyltransferase family 2 protein	69.3	66.9	33.0
MGA_650	LOCUS_06230	sequence19:105664..107025(-)	partial			WP_000214765.1	AAA family ATPase	58.9	28.2	44.2
MGA_656	LOCUS_06290	sequence19:111934..114642(+)	partial			WP_011100953.1	MMPL family transporter	80.0	55.8	39.0
MGA_665	LOCUS_06380	sequence19:121132..124653(+)	partial			WP_011101863.1	SH3 domain-containing protein	48.9	70.2	36.2
MGA_672	LOCUS_06450	sequence19:130379..130924(+)	frameshift		130897	WP_117530778.1	cytosine deaminase	96.1	42.3	53.4
MGA_673	LOCUS_06460	sequence19:130933..131595(+)	frameshift		130897	WP_117530778.1	cytosine deaminase	97.3	52.1	58.9
MGA_674	LOCUS_06470	sequence19:131801..132826(+)	frameshift		132812,131741	WP_003641313.1	class II fumarate hydratase	98.5	73.3	61.1
MGA_675	LOCUS_06480	sequence19:132837..133016(+)	frameshift		132811	WP_011476283.1	class II fumarate hydratase	93.2	12.0	76.4
MGA_691	LOCUS_06640	sequence19:145908..146660(+)	partial			WP_004255227.1	biotin--[acetyl-CoA-carboxylase] ligase	90.0	72.8	29.8
MGA_701	LOCUS_06740	sequence19:152031..152717(+)	frameshift,internal_stop_codon	152716..152718(+)	151938	WP_003642847.1	BCCT family transporter	100.0	41.1	64.5
MGA_702	LOCUS_06750	sequence19:152730..153380(+)	internal_stop_codon	152715..152717(+)		WP_003642847.1	BCCT family transporter	80.6	31.4	67.2
MGA_719	LOCUS_06920	sequence19:169366..169593(-)	internal_stop_codon	169366..169368(-)		WP_003643535.1	hypothetical protein	100.0	61.0	50.7
MGA_730	LOCUS_07030	sequence19:179630..180247(+)	frameshift		180199	WP_002285885.1	ABC transporter ATP-binding protein	93.2	32.4	49.2
MGA_731	LOCUS_07040	sequence19:180397..181395(+)	frameshift		180202	WP_002358756.1	multidrug ABC transporter ATP-binding protein/permease ErfD	99.4	56.0	65.2
MGA_741	LOCUS_07140	sequence19:190095..191285(-)	internal_stop_codon	191352..191354(-)		WP_002438244.1	amino acid permease	99.5	70.3	59.9
MGA_742	LOCUS_07150	sequence19:191352..191711(-)	internal_stop_codon	191352..191354(-)		WP_002438244.1	amino acid permease	96.6	20.6	62.6
MGA_760	LOCUS_07330	sequence19:204901..207195(+)	partial			WP_012775222.1	FtsX-like permease family protein	66.1	47.2	22.1
MGA_764	LOCUS_07370	sequence19:209533..209916(-)	internal_stop_codon	210013..210015(-)		WP_011101195.1	cation:proton antiporter	99.2	20.4	46.0
MGA_765	LOCUS_07380	sequence19:210013..211395(-)	internal_stop_codon	210013..210015(-)		WP_011101195.1	cation:proton antiporter	99.6	73.9	52.0
MGA_770	LOCUS_07430	sequence19:215312..216433(-)	internal_stop_codon	216539..216541(-)		WP_002295940.1	amino acid permease	99.7	76.8	70.4
MGA_771	LOCUS_07440	sequence19:216539..216787(-)	internal_stop_codon	216539..216541(-)		WP_002295940.1	amino acid permease	79.3	13.7	72.3
MGA_779	LOCUS_07520	sequence19:227401..227592(-)	frameshift		227581	WP_003721879.1	GTPase HflX	95.2	14.4	36.7
MGA_803	LOCUS_07750	sequence19:253341..253721(+)	frameshift		253667	WP_010906015.1	5-(carboxyamino)imidazole ribonucleotide mutase	86.5	67.7	67.0
MGA_809	LOCUS_07810	sequence19:256607..258217(+)	frameshift,internal_stop_codon	258143..258145(+)	258139	WP_003645864.1	phosphoribosylformylglycinamidine synthase subunit PurL	94.4	68.9	63.5
MGA_810	LOCUS_07820	sequence19:258202..258843(+)	frameshift		258151	WP_011674596.1	phosphoribosylformylglycinamidine synthase subunit PurL	98.6	28.3	50.5
MGA_880	LOCUS_08520	sequence19:323491..323790(+)	frameshift		323787	WP_011101593.1	ArgE/DapE family deacylase	93.9	24.4	46.8
MGA_881	LOCUS_08530	sequence19:323796..324719(+)	frameshift		323787	WP_003701251.1	ArgE/DapE family deacylase	99.0	72.0	38.8
MGA_915	LOCUS_08860	sequence20:8297..8668(-)	partial			WP_010905958.1	DUF1064 domain-containing protein	69.9	67.7	46.5
MGA_921	LOCUS_08920	sequence20:11749..12564(-)	partial			WP_011860997.1	phage recombination protein Bet	58.7	53.3	55.6
MGA_930	LOCUS_09010	sequence20:14649..14900(-)	partial			WP_010622329.1	Rha family transcriptional regulator	98.8	35.0	58.8
MGA_932	LOCUS_09030	sequence20:15293..15943(+)	partial			WP_003894124.1	transcriptional repressor LexA	54.6	48.6	44.2
MGA_933	LOCUS_09040	sequence20:16068..16745(+)	partial			WP_002387265.1	SHOCT domain-containing protein	64.4	70.8	28.4
MGA_954	LOCUS_09240	sequence21:21366..21983(+)	partial			WP_002287436.1	sigma-70 family RNA polymerase sigma factor	58.5	65.6	32.5
MGA_1028	LOCUS_09980	sequence21:95255..95971(+)	partial			WP_003641072.1	CdaR family protein	100.0	73.5	45.2
MGA_1030	LOCUS_10000	sequence21:97817..98386(+)	partial			WP_003642331.1	L,D-transpeptidase	80.4	72.7	55.9
MGA_1058	LOCUS_10280	sequence21:127315..129147(+)	partial			WP_003722638.1	NlpC/P60 family protein	37.5	58.1	32.2
MGA_1063	LOCUS_10330	sequence21:132879..133982(+)	frameshift		132816	WP_003644720.1	dihydroorotase	99.5	84.9	58.6
MGA_1072	LOCUS_10420	sequence21:141010..141429(-)	partial			WP_003702512.1	3-hydroxyacyl-CoA dehydrogenase	100.0	47.8	50.7
MGA_1102	LOCUS_10720	sequence21:166058..166669(-)	frameshift		166653	WP_011476151.1	replication-associated recombination protein A	97.0	46.8	69.2
MGA_1103	LOCUS_10730	sequence21:166648..167337(-)	frameshift		166659	WP_011109512.1	replication-associated recombination protein A	99.6	53.9	73.4
MGA_1139	LOCUS_11090	sequence21:207557..208042(-)	partial			WP_003641529.1	YslB family protein	93.8	67.0	36.8
MGA_1143	LOCUS_11130	sequence21:210750..211163(+)	partial			WP_003641537.1	DUF948 domain-containing protein	65.7	74.6	42.7
MGA_1162	LOCUS_11320	sequence21:226434..226973(-)	internal_stop_codon	226980..226982(-)		WP_011475894.1	site-specific integrase	94.4	44.8	62.7
MGA_1163	LOCUS_11330	sequence21:226980..227366(-)	frameshift,internal_stop_codon	226980..226982(-)	227346	WP_011475894.1	site-specific integrase	97.7	33.5	53.6
MGA_1170	LOCUS_11400	sequence21:230501..231301(-)	partial			WP_115413024.1	Ltp family lipoprotein	37.2	28.8	49.5
MGA_1194	LOCUS_11640	sequence21:254896..257160(+)	partial			WP_011101414.1	DNA translocase FtsK	62.2	46.9	67.4
MGA_1216	LOCUS_11860	sequence21:275901..277349(+)	partial			WP_000582678.1	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	84.2	52.8	33.5
MGA_1300	LOCUS_12700	sequence21:356795..357121(+)	frameshift		356769	WP_003640522.1	MarR family transcriptional regulator	86.1	66.4	54.8
MGA_1302	LOCUS_12720	sequence21:358165..359172(+)	partial			WP_011101297.1	tyrosine-type recombinase/integrase	53.7	82.6	25.4
MGA_1326	LOCUS_12960	sequence21:384218..385000(-)	partial			WP_011101580.1	LysM domain-containing protein	48.5	61.0	29.7
MGA_1410	LOCUS_13800	sequence21:470926..>471699(-)	partial			WP_003643180.1	leucine--tRNA ligase	99.6	31.7	64.5
MGA_1413	LOCUS_13830	sequence22:1522..1773(-)	partial			WP_011101133.1	phage holin	85.5	59.7	42.3
MGA_1425	LOCUS_13950	sequence23:217..729(-)	partial			WP_168722861.1	IS3 family transposase	97.6	63.3	44.9
MGA_1428	LOCUS_13980	sequence23:2377..2889(-)	frameshift		2930	WP_003641651.1	beta-phosphoglucomutase	100.0	76.2	64.7
MGA_1429	LOCUS_13990	sequence23:2904..3047(-)	frameshift		2930	WP_003641651.1	beta-phosphoglucomutase	78.7	16.6	83.8
MGA_1431	LOCUS_14010	sequence23:6237..6758(-)	internal_stop_codon	6237..6239(-)		WP_011674190.1	IS3 family transposase	100.0	83.6	99.4
MGA_1439	LOCUS_14070	sequence26:331..864(+)	partial			WP_011674315.1	IS30 family transposase	92.7	50.3	39.9
MGA_1449	LOCUS_14150	sequence27:3809..>4346(-)	partial			WP_011475806.1	hydroxymethylglutaryl-CoA synthase	96.6	43.9	39.0
MGA_1451	LOCUS_14160	sequence28:667..1215(+)	partial			WP_156656235.1	IS5 family transposase	89.0	63.0	67.3
MGA_1458	LOCUS_14230	sequence28:8516..8920(-)	partial			WP_104859673.1	IS256 family transposase	98.5	33.7	56.8
MGA_1459	LOCUS_14240	sequence28:8988..9464(-)	partial			WP_002287843.1	IS256-like element ISEfa13 family transposase	95.6	38.8	62.3
