{
    "type": "genome",
    "identifier": "GCF_900167245.1",
    "organism": "Fructilactobacillus lindneri DSM 20690 = JCM 11027",
    "title": "Fructilactobacillus lindneri DSM 20690 = JCM 11027",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900167245.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02746042",
        "wgs_master": "FUXS00000000.1",
        "refseq_category": "na",
        "taxid": "1122148",
        "species_taxid": "53444",
        "organism_name": "Fructilactobacillus lindneri DSM 20690 = JCM 11027",
        "infraspecific_name": "strain=DSM 20690",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/03/04",
        "asm_name": "IMG-taxon 2568526012 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900167245.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/245/GCF_900167245.1_IMG-taxon_2568526012_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1426368",
        "genome_size_ungapped": "1423088",
        "gc_percent": "34.000000",
        "replicon_count": "0",
        "scaffold_count": "31",
        "contig_count": "31",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900167245.1-RS_2024_11_18",
        "annotation_date": "2024-11-18",
        "total_gene_count": "1496",
        "protein_coding_gene_count": "1390",
        "non_coding_gene_count": "69",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-03-04",
    "dateModified": "2017-03-04",
    "datePublished": "2017-03-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fructilactobacillus lindneri DSM 20690 = JCM 11027"
        ],
        "sample_taxid": [
            "1122148"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "0.399 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1426368",
        "Number of Sequences": "31",
        "Longest Sequences (bp)": "471699",
        "N50 (bp)": "349079",
        "Gap Ratio (%)": "0.229955",
        "GCcontent (%)": "34.1",
        "Number of CDSs": "1428",
        "Average Protein Length": "292.5",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "7",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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            },
            {
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                "accession": "GCA_001438685.1",
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                "relation_to_type": "type",
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            },
            {
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Fructilactobacillus sanfranciscensis",
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                "species_taxid": 1625,
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                "validated": true,
                "ani": 79.188,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Apilactobacillus micheneri",
                "strain": "strain=Hlig3",
                "accession": "GCA_002993975.1",
                "taxid": 1899430,
                "species_taxid": 1899430,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Apilactobacillus xinyiensis",
                "strain": "strain=F575-4",
                "accession": "GCA_019656235.1",
                "taxid": 2841032,
                "species_taxid": 2841032,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 64,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_002907375.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
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                "num_clustered_genomes": 12,
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            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "accession": "GCF_002993965.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus",
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                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 9,
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            },
            {
                "accession": "GCF_003864335.1",
                "gtdb_species": "s__Lentilactobacillus curieae_A",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
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        "optimum_ph": null,
        "genome_size": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Fructilactobacillus",
        "lindneri",
        "DSM",
        "20690",
        "=",
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        "11027"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}