{ "type": "genome", "identifier": "GCF_900167265.1", "organism": "Clostridium tetani", "title": "Clostridium tetani", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900167265.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745112", "wgs_master": "FUWT00000000.1", "refseq_category": "na", "taxid": "1513", "species_taxid": "1513", "organism_name": "Clostridium tetani", "infraspecific_name": "strain=ATCC 19406", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/04", "asm_name": "IMG-taxon 2585428146 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900167265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/265/GCF_900167265.1_IMG-taxon_2585428146_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2791217", "genome_size_ungapped": "2789242", "gc_percent": "28.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900167265.1-RS_2024_04_12", "annotation_date": "2024-04-12", "total_gene_count": "2817", "protein_coding_gene_count": "2718", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-04", "dateModified": "2017-03-04", "datePublished": "2017-03-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium tetani" ], "sample_taxid": [ "1513" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom:London, United Kingdom" ], "sample_host_location_id": [], "data_size": "0.757 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2791217", "Number of Sequences": "33", "Longest Sequences (bp)": "449029", "N50 (bp)": "145791", "Gap Ratio (%)": "0.070758", "GCcontent (%)": "28.6", "Number of CDSs": "2745", "Average Protein Length": "299.2", "Coding Ratio (%)": "88.3", "Number of rRNAs": "6", "Number of tRNAs": "40", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium tetani", "strain": "strain=ATCC 19406", "accession": "GCA_900167265.1", "taxid": 1513, 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{ "organism_name": "Clostridium paraputrificum", "strain": "strain=NCTC11833", "accession": "GCA_900447045.1", "taxid": 29363, "species_taxid": 29363, "relation_to_type": "type", "validated": true, "ani": 76.0521, "matched_fragments": 103, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium mediterraneense", "strain": "strain=Marseille-P2434", "accession": "GCA_900091705.1", "taxid": 1805472, "species_taxid": 1805472, "relation_to_type": "type", "validated": true, "ani": 76.0096, "matched_fragments": 87, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium arbusti", "strain": "strain=SL206", "accession": "GCA_000246895.2", "taxid": 1137848, "species_taxid": 1137848, "relation_to_type": "type", "validated": true, "ani": 75.9303, "matched_fragments": 117, "total_fragments": 913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gelidum", 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