{ "type": "genome", "identifier": "GCF_900167345.1", "organism": "Vibrio cincinnatiensis DSM 19608", "title": "Vibrio cincinnatiensis DSM 19608", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900167345.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745782", "wgs_master": "FUXB00000000.1", "refseq_category": "na", "taxid": "1123491", "species_taxid": "675", "organism_name": "Vibrio cincinnatiensis DSM 19608", "infraspecific_name": "strain=DSM 19608", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/04", "asm_name": "IMG-taxon 2568526007 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900167345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/345/GCF_900167345.1_IMG-taxon_2568526007_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3665830", "genome_size_ungapped": "3664182", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900167345.1-RS_2024_07_26", "annotation_date": "2024-07-26", "total_gene_count": "3362", "protein_coding_gene_count": "3249", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-04", "dateModified": "2017-03-04", "datePublished": "2017-03-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio cincinnatiensis DSM 19608" ], "sample_taxid": [ "1123491" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Cincinnati" ], "sample_host_location_id": [], "data_size": "1.048 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3665830", "Number of Sequences": "57", "Longest Sequences (bp)": "327116", "N50 (bp)": "222082", "Gap Ratio (%)": "0.044956", "GCcontent (%)": "43.7", "Number of CDSs": "3253", "Average Protein Length": "327.0", "Coding Ratio (%)": "87.0", "Number of rRNAs": "2", "Number of tRNAs": "60", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio cincinnatiensis", "strain": "strain=DSM 19608", "accession": "GCA_900167345.1", "taxid": 675, 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95, "status": "below_threshold" }, { "organism_name": "Vibrio furnissii", "strain": "strain=PartQ-Vfurnissii-RM8376", "accession": "GCA_022869905.1", "taxid": 29494, "species_taxid": 29494, "relation_to_type": "type", "validated": true, "ani": 79.6319, "matched_fragments": 392, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fluvialis", "strain": "strain=NBRC 103150", "accession": "GCA_001598835.1", "taxid": 676, "species_taxid": 676, "relation_to_type": "type", "validated": true, "ani": 79.5853, "matched_fragments": 393, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fluvialis", "strain": "strain=NCTC11327", "accession": "GCA_900460245.1", "taxid": 676, "species_taxid": 676, "relation_to_type": "type", "validated": true, "ani": 79.5613, "matched_fragments": 397, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio 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true, "ani": 78.3802, "matched_fragments": 286, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900167345.1", "gtdb_species": "s__Vibrio cincinnatiensis", "ani": 100.0, "matched_fragments": 1188, "total_fragments": 1194, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.06", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_002749895.1", "gtdb_species": "s__Vibrio fujianensis", "ani": 84.7243, "matched_fragments": 819, "total_fragments": 1194, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", 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