{ "type": "genome", "identifier": "GCF_900167405.1", "organism": "Globicatella sulfidifaciens DSM 15739", "title": "Globicatella sulfidifaciens DSM 15739", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900167405.1", "bioproject": "PRJNA224116", "biosample": "SAMN02746011", "wgs_master": "FUWO00000000.1", "refseq_category": "reference genome", "taxid": "1121925", "species_taxid": "136093", "organism_name": "Globicatella sulfidifaciens DSM 15739", "infraspecific_name": "strain=DSM 15739", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/04", "asm_name": "IMG-taxon 2524614644 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900167405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/405/GCF_900167405.1_IMG-taxon_2524614644_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2217574", "genome_size_ungapped": "2214276", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900167405.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2021", "protein_coding_gene_count": "1946", "non_coding_gene_count": "27", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-04", "dateModified": "2017-03-04", "datePublished": "2017-03-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Globicatella sulfidifaciens DSM 15739" ], "sample_taxid": [ "1121925" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "0.625 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2217574", "Number of Sequences": "39", "Longest Sequences (bp)": "245010", "N50 (bp)": "106521", "Gap Ratio (%)": "0.148721", "GCcontent (%)": "35.5", "Number of CDSs": "2009", "Average Protein Length": "305.3", "Coding Ratio (%)": "83.0", "Number of rRNAs": "2", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Globicatella sulfidifaciens", "strain": "strain=DSM 15739", "accession": "GCA_900167405.1", "taxid": 136093, "species_taxid": 136093, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 715, "total_fragments": 718, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Globicatella sanguinis", "strain": "strain=NBRC 15551", "accession": "GCA_001552295.1", "taxid": 13076, "species_taxid": 13076, "relation_to_type": "type", "validated": true, "ani": 94.705, "matched_fragments": 513, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vaginisenegalia massiliensis", "strain": "strain=Marseille-P5643", "accession": "GCA_900604935.1", "taxid": 2058294, "species_taxid": 2058294, "relation_to_type": "type", "validated": true, "ani": 80.0441, "matched_fragments": 55, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fundicoccus ignavus", "strain": "strain=DSM 109652", "accession": "GCA_009659375.1", "taxid": 2664442, "species_taxid": 2664442, "relation_to_type": "type", "validated": true, "ani": 78.8541, "matched_fragments": 91, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruoffia halotolerans", "strain": "strain=INB8", "accession": "GCA_014049385.1", "taxid": 2748684, "species_taxid": 2748684, "relation_to_type": "type", "validated": true, "ani": 78.7196, "matched_fragments": 67, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eremococcus coleocola", "strain": "strain=DSM 15696", "accession": "GCA_000428865.1", "taxid": 88132, "species_taxid": 88132, "relation_to_type": "type", "validated": true, "ani": 77.4491, "matched_fragments": 61, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900167405.1", "gtdb_species": "s__Globicatella sulfidifaciens", "ani": 100.0, "matched_fragments": 715, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Globicatella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.81", "mean_intra_species_af": "0.71", "min_intra_species_af": "0.71", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001552295.1", "gtdb_species": "s__Globicatella sanguinis", "ani": 94.705, "matched_fragments": 513, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Globicatella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.13", "min_intra_species_ani": "96.22", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900604935.1", "gtdb_species": "s__Abiotrophia massiliensis", "ani": 79.9224, "matched_fragments": 56, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009659375.1", "gtdb_species": "s__Fundicoccus ignavus", "ani": 78.8541, "matched_fragments": 91, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Fundicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.16", "min_intra_species_ani": "98.10", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_015863215.1", "gtdb_species": "s__DSM-111022 sp015863215", "ani": 78.3232, "matched_fragments": 57, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__DSM-111022", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016237705.1", "gtdb_species": "s__Globicatella sp010892315", "ani": 78.319, "matched_fragments": 169, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Globicatella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "97.07", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_016126655.1", "gtdb_species": "s__Globicatella sp016126655", "ani": 78.2787, "matched_fragments": 148, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Globicatella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "98.51", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_005864045.1", "gtdb_species": "s__Facklamia_A tabacinasalis", "ani": 78.0894, "matched_fragments": 67, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Facklamia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.44", "min_intra_species_ani": "96.27", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 2217574.0, "gc_content": 35.485, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": null, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Globicatella", "sulfidifaciens", "DSM", "15739" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }