{ "type": "genome", "identifier": "GCF_900167445.1", "organism": "Maledivibacter halophilus", "title": "Maledivibacter halophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900167445.1", "bioproject": "PRJNA224116", "biosample": "SAMN02194393", "wgs_master": "FUZT00000000.1", "refseq_category": "reference genome", "taxid": "36842", "species_taxid": "36842", "organism_name": "Maledivibacter halophilus", "infraspecific_name": "strain=M1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/09", "asm_name": "IMG-taxon 2524614863 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900167445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/445/GCF_900167445.1_IMG-taxon_2524614863_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5802910", "genome_size_ungapped": "5797066", "gc_percent": "31.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900167445.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "5520", "protein_coding_gene_count": "5401", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-09", "dateModified": "2017-03-09", "datePublished": "2017-03-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Maledivibacter halophilus DSM 5387" ], "sample_taxid": [ "1121317" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.594 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5802910", "Number of Sequences": "39", "Longest Sequences (bp)": "912189", "N50 (bp)": "357555", "Gap Ratio (%)": "0.100708", "GCcontent (%)": "31.1", "Number of CDSs": "5449", "Average Protein Length": "300.4", "Coding Ratio (%)": "84.6", "Number of rRNAs": "5", "Number of tRNAs": "54", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Maledivibacter halophilus", "strain": "strain=M1", "accession": "GCA_900167445.1", "taxid": 36842, "species_taxid": 36842, 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"ani": 76.5749, "matched_fragments": 197, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidibacter formicigenes", "strain": "strain=DSM 15518", "accession": "GCA_900142235.1", "taxid": 227138, "species_taxid": 227138, "relation_to_type": "type", "validated": true, "ani": 75.4669, "matched_fragments": 119, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetoanaerobium pronyense", "strain": "strain=DSM 27512", "accession": "GCA_017874355.1", "taxid": 1482736, "species_taxid": 1482736, "relation_to_type": "type", "validated": true, "ani": 75.3527, "matched_fragments": 63, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium pascui", "strain": "strain=DSM 10365", "accession": "GCA_016908015.1", "taxid": 46609, "species_taxid": 46609, "relation_to_type": "type", "validated": true, "ani": 75.1078, "matched_fragments": 80, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium swellfunianum", "strain": "strain=CICC 10730", "accession": "GCA_023656515.1", "taxid": 1367462, "species_taxid": 1367462, "relation_to_type": "type", "validated": true, "ani": 75.088, "matched_fragments": 59, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloimpatiens massiliensis", "strain": "strain=Mt13", "accession": "GCA_900184255.1", "taxid": 1658110, "species_taxid": 1658110, "relation_to_type": "type", "validated": true, "ani": 75.0011, "matched_fragments": 92, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium carboxidivorans", "strain": "strain=P7", "accession": "GCA_000175595.1", "taxid": 217159, "species_taxid": 217159, "relation_to_type": "type", "validated": true, "ani": 74.8971, "matched_fragments": 94, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium carboxidivorans", "strain": "strain=P7", "accession": "GCA_001038625.1", "taxid": 217159, "species_taxid": 217159, "relation_to_type": "type", "validated": true, "ani": 74.8741, "matched_fragments": 99, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saudiense", "strain": "strain=JCC", "accession": "GCA_000577815.1", "taxid": 1414720, "species_taxid": 1414720, "relation_to_type": "type", "validated": true, "ani": 74.7905, "matched_fragments": 78, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium frigoris", "strain": "strain=DSM 14204", "accession": "GCA_018861865.1", "taxid": 205327, "species_taxid": 205327, "relation_to_type": "type", "validated": true, "ani": 74.6985, "matched_fragments": 78, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 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