{
    "type": "genome",
    "identifier": "GCF_900167465.1",
    "organism": "Trichlorobacter thiogenes",
    "title": "Trichlorobacter thiogenes",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900167465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02745119",
        "wgs_master": "FUWR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "115783",
        "species_taxid": "115783",
        "organism_name": "Trichlorobacter thiogenes",
        "infraspecific_name": "strain=ATCC BAA-34",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/03/04",
        "asm_name": "IMG-taxon 2585428117 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900167465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/465/GCF_900167465.1_IMG-taxon_2585428117_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3571247",
        "genome_size_ungapped": "3570629",
        "gc_percent": "53.000000",
        "replicon_count": "0",
        "scaffold_count": "42",
        "contig_count": "42",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900167465.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "3359",
        "protein_coding_gene_count": "3277",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-03-04",
    "dateModified": "2017-03-04",
    "datePublished": "2017-03-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Trichlorobacter thiogenes"
        ],
        "sample_taxid": [
            "115783"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Muskegon County, MI"
        ],
        "sample_host_location_id": [],
        "data_size": "1.014 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3571247",
        "Number of Sequences": "42",
        "Longest Sequences (bp)": "684616",
        "N50 (bp)": "169693",
        "Gap Ratio (%)": "0.017305",
        "GCcontent (%)": "52.8",
        "Number of CDSs": "3279",
        "Average Protein Length": "330.8",
        "Coding Ratio (%)": "91.1",
        "Number of rRNAs": "9",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Trichlorobacter thiogenes",
                "strain": "strain=ATCC BAA-34",
                "accession": "GCA_900167465.1",
                "taxid": 115783,
                "species_taxid": 115783,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1166,
                "total_fragments": 1167,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Trichlorobacter lovleyi",
                "strain": "strain=SZ",
                "accession": "GCA_000020385.1",
                "taxid": 313985,
                "species_taxid": 313985,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.755,
                "matched_fragments": 803,
                "total_fragments": 1167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacter luticola",
                "strain": "strain=JCM 17780",
                "accession": "GCA_018476905.1",
                "taxid": 1114878,
                "species_taxid": 1114878,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0976,
                "matched_fragments": 111,
                "total_fragments": 1167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geotalea uraniireducens",
                "strain": "strain=Rf4",
                "accession": "GCA_000016745.1",
                "taxid": 351604,
                "species_taxid": 351604,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1205,
                "matched_fragments": 87,
                "total_fragments": 1167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oryzomonas sagensis",
                "strain": "strain=Red100",
                "accession": "GCA_008802355.1",
                "taxid": 2603857,
                "species_taxid": 2603857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9227,
                "matched_fragments": 161,
                "total_fragments": 1167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oryzomonas japonica",
                "strain": "strain=Red96",
                "accession": "GCA_008802365.1",
                "taxid": 2603858,
                "species_taxid": 2603858,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8305,
                "matched_fragments": 149,
                "total_fragments": 1167,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacter chapellei",
                "strain": "strain=DSM 13688",
                "accession": "GCA_018531195.1",
                "taxid": 44671,
                "species_taxid": 44671,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.487,
                "matched_fragments": 97,
                "total_fragments": 1167,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900167465.1",
                "gtdb_species": "s__Trichlorobacter thiogenes",
                "ani": 100.0,
                "matched_fragments": 1166,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__Trichlorobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000020385.1",
                "gtdb_species": "s__Trichlorobacter lovleyi",
                "ani": 84.7446,
                "matched_fragments": 802,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__Trichlorobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002452325.1",
                "gtdb_species": "s__Trichlorobacter sp002452325",
                "ani": 80.6597,
                "matched_fragments": 395,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__Trichlorobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002328035.1",
                "gtdb_species": "s__Trichlorobacter sp002328035",
                "ani": 79.2865,
                "matched_fragments": 212,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__Trichlorobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002422265.1",
                "gtdb_species": "s__Trichlorobacter sp002422265",
                "ani": 79.1914,
                "matched_fragments": 387,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__Trichlorobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "97.94",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002419465.1",
                "gtdb_species": "s__Trichlorobacter sp002419465",
                "ani": 78.3924,
                "matched_fragments": 371,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__Trichlorobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.58",
                "min_intra_species_ani": "99.35",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002424705.1",
                "gtdb_species": "s__Trichlorobacter sp002424705",
                "ani": 78.1245,
                "matched_fragments": 203,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__Trichlorobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002423105.1",
                "gtdb_species": "s__Trichlorobacter sp002423105",
                "ani": 78.032,
                "matched_fragments": 315,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__Trichlorobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008802355.1",
                "gtdb_species": "s__Oryzomonas sagensis",
                "ani": 76.9534,
                "matched_fragments": 159,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__Oryzomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016650295.1",
                "gtdb_species": "s__CAIPTY01 sp016650295",
                "ani": 76.5653,
                "matched_fragments": 162,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__CAIPTY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001824455.1",
                "gtdb_species": "s__JACPFJ01 sp001824455",
                "ani": 76.3912,
                "matched_fragments": 73,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACPFJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903876875.1",
                "gtdb_species": "s__JACRCG01 sp903876875",
                "ani": 76.2434,
                "matched_fragments": 100,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016219145.1",
                "gtdb_species": "s__JACRCG01 sp016219145",
                "ani": 76.0843,
                "matched_fragments": 88,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903939115.1",
                "gtdb_species": "s__JACRCG01 sp903939115",
                "ani": 76.0605,
                "matched_fragments": 82,
                "total_fragments": 1167,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Geobacterales;f__Pseudopelobacteraceae;g__JACRCG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.82",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 10,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Trichlorobacter",
        "thiogenes"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}