{ "type": "genome", "identifier": "GCF_900167575.1", "organism": "Okibacterium fritillariae", "title": "Okibacterium fritillariae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900167575.1", "bioproject": "PRJNA224116", "biosample": "SAMN06309945", "wgs_master": "FUZP00000000.1", "refseq_category": "reference genome", "taxid": "123320", "species_taxid": "123320", "organism_name": "Okibacterium fritillariae", "infraspecific_name": "strain=VKM Ac-2059", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/09", "asm_name": "IMG-taxon 2708742390 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900167575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/575/GCF_900167575.1_IMG-taxon_2708742390_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3138231", "genome_size_ungapped": "3138231", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900167575.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2872", "protein_coding_gene_count": "2810", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-09", "dateModified": "2017-03-09", "datePublished": "2017-03-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Okibacterium fritillariae" ], "sample_taxid": [ "123320" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.852 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3138231", "Number of Sequences": "4", "Longest Sequences (bp)": "2068692", "N50 (bp)": "2068692", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "2843", "Average Protein Length": "334.4", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Okibacterium fritillariae", "strain": "strain=VKM Ac-2059", "accession": "GCA_900167575.1", 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"total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycetocola zhujimingii", "strain": "strain=449 = CGMCC 1.16372", "accession": "GCA_003065425.1", "taxid": 2079792, "species_taxid": 2079792, "relation_to_type": "type", "validated": true, "ani": 79.2257, "matched_fragments": 318, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces luteolus", "strain": "strain=JCM 11431", "accession": "GCA_009729855.1", "taxid": 88373, "species_taxid": 88373, "relation_to_type": "type", "validated": true, "ani": 79.2094, "matched_fragments": 388, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_021922985.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 79.134, "matched_fragments": 399, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_002240635.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 79.1161, "matched_fragments": 402, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces agglutinans", "strain": "strain=CFH 90414", "accession": "GCA_009647605.1", "taxid": 2662258, "species_taxid": 2662258, "relation_to_type": "type", "validated": true, "ani": 79.1062, "matched_fragments": 407, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces bracchium", "strain": "strain=JCM 11433", "accession": "GCA_009709675.1", "taxid": 88376, "species_taxid": 88376, "relation_to_type": "type", "validated": true, "ani": 79.1028, "matched_fragments": 401, "total_fragments": 1043, "ani_threshold": 95, "status": 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