{ "type": "genome", "identifier": "GCF_900167945.1", "organism": "Dyadobacter psychrophilus", "title": "Dyadobacter psychrophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900167945.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660293", "wgs_master": "FUZA00000000.1", "refseq_category": "reference genome", "taxid": "651661", "species_taxid": "651661", "organism_name": "Dyadobacter psychrophilus", "infraspecific_name": "strain=DSM 22270", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/08", "asm_name": "IMG-taxon 2595698219 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900167945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/167/945/GCF_900167945.1_IMG-taxon_2595698219_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6736930", "genome_size_ungapped": "6734405", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900167945.1-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "5713", "protein_coding_gene_count": "5653", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-08", "dateModified": "2017-03-08", "datePublished": "2017-03-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Dyadobacter psychrophilus" ], "sample_taxid": [ "651661" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: South Tyrol, Bozen" ], "sample_host_location_id": [], "data_size": "1.916 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6736930", "Number of Sequences": "32", "Longest Sequences (bp)": "1696857", "N50 (bp)": "519136", "Gap Ratio (%)": "0.037480", "GCcontent (%)": "45.1", "Number of CDSs": "5582", "Average Protein Length": "363.3", "Coding Ratio (%)": "90.3", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dyadobacter psychrophilus", "strain": "strain=DSM 22270", "accession": "GCA_900167945.1", "taxid": 651661, "species_taxid": 651661, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2226, "total_fragments": 2229, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Dyadobacter alkalitolerans", "strain": "strain=DSM 23607", "accession": "GCA_000428845.1", "taxid": 492736, "species_taxid": 492736, "relation_to_type": "type", "validated": true, "ani": 83.2723, "matched_fragments": 1419, "total_fragments": 2229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter sediminis", "strain": "strain=CGMCC 1.12895", "accession": "GCA_014640015.1", "taxid": 1493691, "species_taxid": 1493691, "relation_to_type": "type", "validated": true, "ani": 79.6892, "matched_fragments": 632, "total_fragments": 2229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter bucti", "strain": "strain=QTA69", "accession": "GCA_005869225.1", "taxid": 2572203, "species_taxid": 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"ani": 78.5575, "matched_fragments": 691, "total_fragments": 2229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter arcticus", "strain": "strain=DSM 102865", "accession": "GCA_011762185.1", "taxid": 1078754, "species_taxid": 1078754, "relation_to_type": "type", "validated": true, "ani": 78.2899, "matched_fragments": 568, "total_fragments": 2229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter crusticola", "strain": "strain=DSM 16708", "accession": "GCA_000701505.1", "taxid": 292407, "species_taxid": 292407, "relation_to_type": "type", "validated": true, "ani": 78.0169, "matched_fragments": 573, "total_fragments": 2229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter jiangsuensis", "strain": "strain=DSM 29057", "accession": "GCA_003014695.1", "taxid": 1591085, "species_taxid": 1591085, "relation_to_type": "type", "validated": true, "ani": 77.9435, "matched_fragments": 565, "total_fragments": 2229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter fermentans", "strain": "strain=DSM 18053", "accession": "GCA_000023125.1", "taxid": 94254, "species_taxid": 94254, "relation_to_type": "type", "validated": true, "ani": 77.8924, "matched_fragments": 564, "total_fragments": 2229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter soli", "strain": "strain=DSM 25329", "accession": "GCA_900101885.1", "taxid": 659014, "species_taxid": 659014, "relation_to_type": "type", "validated": true, "ani": 77.8523, "matched_fragments": 612, "total_fragments": 2229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter sandarakinus", "strain": "strain=Q3-56", "accession": "GCA_016894445.1", "taxid": 2747268, "species_taxid": 2747268, "relation_to_type": "type", "validated": true, "ani": 77.7444, "matched_fragments": 424, "total_fragments": 2229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter beijingensis", "strain": "strain=DSM 21582", "accession": "GCA_000382205.1", "taxid": 365489, "species_taxid": 365489, "relation_to_type": "type", "validated": true, "ani": 77.5736, "matched_fragments": 610, "total_fragments": 2229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter beijingensis", "strain": "strain=CGMCC 1.6375", "accession": "GCA_014645155.1", "taxid": 365489, "species_taxid": 365489, "relation_to_type": "type", "validated": true, "ani": 77.5654, "matched_fragments": 607, "total_fragments": 2229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter frigoris", "strain": "strain=AR-3-8", "accession": "GCA_005280585.1", "taxid": 2576211, "species_taxid": 2576211, "relation_to_type": "type", "validated": true, "ani": 77.5013, "matched_fragments": 359, "total_fragments": 2229, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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