{ "type": "genome", "identifier": "GCF_900168005.1", "organism": "Sphingopyxis flava", "title": "Sphingopyxis flava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900168005.1", "bioproject": "PRJNA224116", "biosample": "SAMN06295937", "wgs_master": "FUYP00000000.1", "refseq_category": "reference genome", "taxid": "1507287", "species_taxid": "1507287", "organism_name": "Sphingopyxis flava", "infraspecific_name": "strain=R11H", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/03/08", "asm_name": "IMG-taxon 2706795030 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900168005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/168/005/GCF_900168005.1_IMG-taxon_2706795030_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4155299", "genome_size_ungapped": "4155299", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "119", "contig_count": "119", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900168005.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4182", "protein_coding_gene_count": "4037", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-03-08", "dateModified": "2017-03-08", "datePublished": "2017-03-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingopyxis flava" ], "sample_taxid": [ "1507287" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.158 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4155299", "Number of Sequences": "119", "Longest Sequences (bp)": "284639", "N50 (bp)": "139097", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "4085", "Average Protein Length": "302.0", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingopyxis flava", "strain": "strain=R11H", "accession": "GCA_900168005.1", "taxid": 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