{
    "type": "genome",
    "identifier": "GCF_900168015.1",
    "organism": "Daejeonella lutea",
    "title": "Daejeonella lutea",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900168015.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05661099",
        "wgs_master": "FUYR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "572036",
        "species_taxid": "572036",
        "organism_name": "Daejeonella lutea",
        "infraspecific_name": "strain=DSM 22385",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/03/08",
        "asm_name": "IMG-taxon 2595698248 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900168015.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/168/015/GCF_900168015.1_IMG-taxon_2595698248_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4028641",
        "genome_size_ungapped": "4027791",
        "gc_percent": "42.500000",
        "replicon_count": "0",
        "scaffold_count": "10",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900168015.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3579",
        "protein_coding_gene_count": "3525",
        "non_coding_gene_count": "45",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-03-08",
    "dateModified": "2017-03-08",
    "datePublished": "2017-03-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Daejeonella lutea"
        ],
        "sample_taxid": [
            "572036"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea:Republic of Korea, Chungcheongbuk-do"
        ],
        "sample_host_location_id": [],
        "data_size": "1.149 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4028641",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "2005108",
        "N50 (bp)": "1018916",
        "Gap Ratio (%)": "0.021099",
        "GCcontent (%)": "42.3",
        "Number of CDSs": "3462",
        "Average Protein Length": "339.6",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "5",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Daejeonella lutea",
                "strain": "strain=DSM 22385",
                "accession": "GCA_900168015.1",
                "taxid": 572036,
                "species_taxid": 572036,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1336,
                "total_fragments": 1338,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Daejeonella rubra",
                "strain": "strain=DSM 24536",
                "accession": "GCA_900103545.1",
                "taxid": 990371,
                "species_taxid": 990371,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1624,
                "matched_fragments": 222,
                "total_fragments": 1338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavihumibacter soli",
                "strain": "strain=R14",
                "accession": "GCA_010692725.1",
                "taxid": 2705549,
                "species_taxid": 2705549,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7338,
                "matched_fragments": 99,
                "total_fragments": 1338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedobacter zeae",
                "strain": "strain=DSM 100774",
                "accession": "GCA_014196715.1",
                "taxid": 1737356,
                "species_taxid": 1737356,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5254,
                "matched_fragments": 53,
                "total_fragments": 1338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mucilaginibacter polytrichastri",
                "strain": "strain=RG4-7",
                "accession": "GCA_001911425.1",
                "taxid": 1302689,
                "species_taxid": 1302689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3224,
                "matched_fragments": 52,
                "total_fragments": 1338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Daejeonella oryzae",
                "strain": "strain=DSM 19973",
                "accession": "GCA_000422945.1",
                "taxid": 1122943,
                "species_taxid": 1122943,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.315,
                "matched_fragments": 112,
                "total_fragments": 1338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedobacter mucosus",
                "strain": "strain=Q8-18",
                "accession": "GCA_022200785.1",
                "taxid": 2895286,
                "species_taxid": 2895286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2851,
                "matched_fragments": 56,
                "total_fragments": 1338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedobacter nototheniae",
                "strain": "strain=36B243",
                "accession": "GCA_004335085.1",
                "taxid": 2488994,
                "species_taxid": 2488994,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0974,
                "matched_fragments": 54,
                "total_fragments": 1338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedobacter terrae",
                "strain": "strain=DSM 17933",
                "accession": "GCA_900100705.1",
                "taxid": 405671,
                "species_taxid": 405671,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9023,
                "matched_fragments": 64,
                "total_fragments": 1338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcticibacter tournemirensis",
                "strain": "strain=DSM 23085",
                "accession": "GCA_006716645.1",
                "taxid": 699437,
                "species_taxid": 699437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8183,
                "matched_fragments": 61,
                "total_fragments": 1338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcticibacter tournemirensis",
                "strain": "strain=TF5-37.2-LB10",
                "accession": "GCA_008690275.1",
                "taxid": 699437,
                "species_taxid": 699437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5657,
                "matched_fragments": 59,
                "total_fragments": 1338,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mucilaginibacter polytrichastri",
                "strain": "strain=DSM 26907",
                "accession": "GCA_900116355.1",
                "taxid": 1302689,
                "species_taxid": 1302689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5508,
                "matched_fragments": 51,
                "total_fragments": 1338,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900168015.1",
                "gtdb_species": "s__Daejeonella lutea",
                "ani": 100.0,
                "matched_fragments": 1336,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Daejeonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017495225.1",
                "gtdb_species": "s__Daejeonella sp017495225",
                "ani": 78.2577,
                "matched_fragments": 137,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Daejeonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900103545.1",
                "gtdb_species": "s__Daejeonella rubra",
                "ani": 78.1624,
                "matched_fragments": 222,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Daejeonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002257025.1",
                "gtdb_species": "s__Daejeonella sp002257025",
                "ani": 78.0148,
                "matched_fragments": 209,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Daejeonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000422945.1",
                "gtdb_species": "s__Daejeonella oryzae",
                "ani": 77.3417,
                "matched_fragments": 111,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Daejeonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001911425.1",
                "gtdb_species": "s__Mucilaginibacter polytrichastri",
                "ani": 77.3114,
                "matched_fragments": 53,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009765875.1",
                "gtdb_species": "s__Pedobacter sp009765875",
                "ani": 77.2785,
                "matched_fragments": 52,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903821625.1",
                "gtdb_species": "s__Daejeonella sp903821625",
                "ani": 77.2581,
                "matched_fragments": 126,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Daejeonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004335085.1",
                "gtdb_species": "s__Pedobacter nototheniae",
                "ani": 77.0974,
                "matched_fragments": 54,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "98.28",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_011303555.1",
                "gtdb_species": "s__Pedobacter sp003852395",
                "ani": 77.0208,
                "matched_fragments": 55,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.47",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_015223055.1",
                "gtdb_species": "s__Pedobacter sp015223055",
                "ani": 76.9582,
                "matched_fragments": 53,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900100705.1",
                "gtdb_species": "s__Pedobacter terrae",
                "ani": 76.9023,
                "matched_fragments": 64,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006716645.1",
                "gtdb_species": "s__Pararcticibacter tournemirensis",
                "ani": 76.8159,
                "matched_fragments": 62,
                "total_fragments": 1338,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pararcticibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "96.45",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Daejeonella",
        "lutea"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}