{ "type": "genome", "identifier": "GCF_900169065.1", "organism": "Brevibacterium aurantiacum", "title": "Brevibacterium aurantiacum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INRA GRIGNON", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900169065.1", "bioproject": "PRJNA224116", "biosample": "SAMEA103737418", "wgs_master": "FXZB00000000.1", "refseq_category": "na", "taxid": "273384", "species_taxid": "273384", "organism_name": "Brevibacterium aurantiacum", "infraspecific_name": "strain=ATCC 9175", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/29", "asm_name": "Assembly_BAUR9175", "asm_submitter": "INRA GRIGNON", "gbrs_paired_asm": "GCA_900169065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/169/065/GCF_900169065.1_Assembly_BAUR9175", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4147494", "genome_size_ungapped": "4147494", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900169065.1-RS_2024_09_01", "annotation_date": "2024-09-01", "total_gene_count": "3823", "protein_coding_gene_count": "3709", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-29", "dateModified": "2017-12-29", "datePublished": "2017-12-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium aurantiacum" ], "sample_taxid": [ "273384" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.159 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4147494", "Number of Sequences": "70", "Longest Sequences (bp)": "367729", "N50 (bp)": "146115", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "3803", "Average Protein Length": "324.3", "Coding Ratio (%)": "89.2", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacterium aurantiacum", "strain": "strain=ATCC 9175", "accession": "GCA_900169065.1", "taxid": 273384, "species_taxid": 273384, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1346, "total_fragments": 1348, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevibacterium zhoupengii", "strain": "strain=HY170", "accession": "GCA_021117425.1", "taxid": 2898795, "species_taxid": 2898795, "relation_to_type": "type", "validated": true, "ani": 92.6857, "matched_fragments": 1105, "total_fragments": 1348, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium antiquum", "strain": "strain=DSM 21545", "accession": "GCA_016107655.1", "taxid": 234835, "species_taxid": 234835, "relation_to_type": "type", "validated": true, "ani": 88.0678, "matched_fragments": 1062, "total_fragments": 1348, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium sandarakinum", "strain": "strain=DSM 22082", "accession": "GCA_900105045.1", "taxid": 629680, "species_taxid": 629680, "relation_to_type": "type", "validated": true, "ani": 87.3602, "matched_fragments": 1057, "total_fragments": 1348, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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