{ "type": "genome", "identifier": "GCF_900169175.1", "organism": "Brevibacterium jeotgali", "title": "Brevibacterium jeotgali", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INRA GRIGNON", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900169175.1", "bioproject": "PRJNA224116", "biosample": "SAMEA103891067", "wgs_master": "FXZM00000000.1", "refseq_category": "na", "taxid": "1262550", "species_taxid": "1262550", "organism_name": "Brevibacterium jeotgali", "infraspecific_name": "strain=SJ5-8", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/29", "asm_name": "Assembly_BJEO58", "asm_submitter": "INRA GRIGNON", "gbrs_paired_asm": "GCA_900169175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/169/175/GCF_900169175.1_Assembly_BJEO58", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3297707", "genome_size_ungapped": "3297707", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900169175.1-RS_2024_09_01", "annotation_date": "2024-09-01", "total_gene_count": "2956", "protein_coding_gene_count": "2863", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-29", "dateModified": "2017-12-29", "datePublished": "2017-12-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium jeotgali" ], "sample_taxid": [ "1262550" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.896 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3297707", "Number of Sequences": "47", "Longest Sequences (bp)": "407497", "N50 (bp)": "187216", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.3", "Number of CDSs": "2921", "Average Protein Length": "338.8", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacterium jeotgali", "strain": "strain=SJ5-8", "accession": "GCA_900169175.1", "taxid": 1262550, "species_taxid": 1262550, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1071, "total_fragments": 1072, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevibacterium jeotgali", "strain": "strain=DSM 29217", "accession": "GCA_007828155.1", "taxid": 1262550, "species_taxid": 1262550, "relation_to_type": "type", "validated": true, "ani": 99.9998, "matched_fragments": 1060, "total_fragments": 1072, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevibacterium yomogidense", "strain": "strain=DSM 24850", "accession": "GCA_016107685.1", "taxid": 946573, "species_taxid": 946573, "relation_to_type": "type", "validated": true, "ani": 82.1992, "matched_fragments": 772, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium senegalense", "strain": "strain=JC43", "accession": "GCA_000285835.2", "taxid": 1033736, "species_taxid": 1033736, "relation_to_type": "type", "validated": true, "ani": 81.4435, "matched_fragments": 673, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium album", "strain": "strain=DSM 18261", "accession": "GCA_000426445.1", "taxid": 417948, "species_taxid": 417948, "relation_to_type": "type", "validated": true, "ani": 79.1809, "matched_fragments": 520, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium ihuae", "strain": "strain=CV3", "accession": "GCA_900184225.1", "taxid": 1631743, "species_taxid": 1631743, "relation_to_type": "type", "validated": true, "ani": 78.7701, "matched_fragments": 381, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium daeguense", "strain": "strain=DSM 27938", "accession": "GCA_021729135.1", "taxid": 909936, "species_taxid": 909936, "relation_to_type": "type", "validated": true, "ani": 78.3085, "matched_fragments": 333, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium gallinarum", "strain": "strain=Re57", 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