{ "type": "genome", "identifier": "GCF_900172215.1", "organism": "Ruegeria meonggei", "title": "Ruegeria meonggei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900172215.1", "bioproject": "PRJNA224116", "biosample": "SAMEA102343918", "wgs_master": "FWFP00000000.1", "refseq_category": "na", "taxid": "1446476", "species_taxid": "1446476", "organism_name": "Ruegeria meonggei", "infraspecific_name": "strain=CECT 8411", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/29", "asm_name": "R.meonggei_CECT8411_Spades_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900172215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/172/215/GCF_900172215.1_R.meonggei_CECT8411_Spades_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4543068", "genome_size_ungapped": "4543068", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900172215.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4492", "protein_coding_gene_count": "4387", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-29", "dateModified": "2017-04-29", "datePublished": "2017-04-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Ruegeria meonggei" ], "sample_taxid": [ "1446476" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.288 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4543068", "Number of Sequences": "33", "Longest Sequences (bp)": "535168", "N50 (bp)": "403937", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.3", "Number of CDSs": "4473", "Average Protein Length": "304.0", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ruegeria meonggei", "strain": "strain=CECT 8411", "accession": "GCA_900172215.1", "taxid": 1446476, "species_taxid": 1446476, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1500, "total_fragments": 1501, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ruegeria denitrificans", "strain": "strain=CECT 5091", "accession": "GCA_001458295.1", "taxid": 1715692, "species_taxid": 1715692, "relation_to_type": "type", "validated": true, "ani": 81.8956, "matched_fragments": 919, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria faecimaris", "strain": "strain=DSM 28009", "accession": "GCA_900182615.1", "taxid": 686389, "species_taxid": 686389, "relation_to_type": "type", "validated": true, "ani": 81.6485, "matched_fragments": 814, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria atlantica", "strain": "strain=CECT 4292", "accession": "GCA_001458195.1", "taxid": 81569, "species_taxid": 81569, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3907, "matched_fragments": 892, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria haliotis", "strain": "strain=B1Z28", "accession": "GCA_013377785.1", "taxid": 2747601, "species_taxid": 2747601, "relation_to_type": "type", "validated": true, "ani": 80.8392, "matched_fragments": 808, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria halocynthiae", "strain": "strain=DSM 27839", "accession": "GCA_900106805.1", "taxid": 985054, "species_taxid": 985054, "relation_to_type": "type", "validated": true, "ani": 80.5986, "matched_fragments": 721, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria profundi", "strain": "strain=ZGT108", "accession": "GCA_001507545.1", "taxid": 1685378, "species_taxid": 1685378, "relation_to_type": "type", "validated": true, "ani": 80.4714, "matched_fragments": 741, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria conchae", "strain": "strain=DSM 29317", "accession": "GCA_003664205.1", "taxid": 981384, "species_taxid": 981384, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4378, "matched_fragments": 704, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria conchae", "strain": "strain=TW15", "accession": "GCA_000192475.2", "taxid": 981384, "species_taxid": 981384, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3579, "matched_fragments": 714, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquaemixtae", "strain": "strain=CECT 8399", "accession": "GCA_001458395.1", "taxid": 1396826, "species_taxid": 1396826, "relation_to_type": "type", "validated": true, "ani": 78.1493, "matched_fragments": 450, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera daeponensis", "strain": "strain=DSM 23529", "accession": "GCA_000473145.1", "taxid": 405746, 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