{ "type": "genome", "identifier": "GCF_900172235.1", "organism": "Pseudoruegeria aquimaris", "title": "Pseudoruegeria aquimaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900172235.1", "bioproject": "PRJNA224116", "biosample": "SAMEA102067918", "wgs_master": "FWFQ00000000.1", "refseq_category": "reference genome", "taxid": "393663", "species_taxid": "393663", "organism_name": "Pseudoruegeria aquimaris", "infraspecific_name": "strain=CECT 7680", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/29", "asm_name": "Ps.aquimaris_CECT7680_Spades_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900172235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/172/235/GCF_900172235.1_Ps.aquimaris_CECT7680_Spades_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3691014", "genome_size_ungapped": "3691014", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "60", "contig_count": "60", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900172235.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "3712", "protein_coding_gene_count": "3629", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-29", "dateModified": "2017-04-29", "datePublished": "2017-04-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoruegeria aquimaris" ], "sample_taxid": [ "393663" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.011 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3691014", "Number of Sequences": "60", "Longest Sequences (bp)": "293886", "N50 (bp)": "114539", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.7", "Number of CDSs": "3639", "Average Protein Length": "307.0", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salipiger profundus", "strain": "strain=CGMCC 1.12377", "accession": "GCA_014637265.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 79.5049, "matched_fragments": 522, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger thiooxidans", "strain": "strain=DSM 10146", "accession": "GCA_900102075.1", "taxid": 282683, "species_taxid": 282683, "relation_to_type": "type", "validated": true, "ani": 79.3373, "matched_fragments": 548, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter harenae", "strain": "strain=DP07", "accession": "GCA_009882975.1", "taxid": 2606218, "species_taxid": 2606218, "relation_to_type": "type", "validated": true, "ani": 79.3226, "matched_fragments": 467, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=CGMCC 1.3455", "accession": "GCA_900100725.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1533, "matched_fragments": 539, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=CGMCC 1.6293", "accession": "GCA_014645095.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 79.1525, "matched_fragments": 549, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=DSM 26894", "accession": "GCA_900116195.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1343, "matched_fragments": 542, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=22DY15", "accession": "GCA_002094875.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 79.1175, "matched_fragments": 376, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=DSM 18065", "accession": "GCA_000688295.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 79.1163, "matched_fragments": 552, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera daeponensis", "strain": "strain=DSM 23529", "accession": "GCA_000473145.1", "taxid": 405746, "species_taxid": 405746, "relation_to_type": "type", "validated": true, "ani": 78.9931, "matched_fragments": 501, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera caerulea", "strain": "strain=DSM 24564", "accession": "GCA_000473325.1", "taxid": 506591, "species_taxid": 506591, "relation_to_type": "type", "validated": true, "ani": 78.9708, "matched_fragments": 484, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 78.9329, "matched_fragments": 529, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=DSM 27767", "accession": "GCA_002797755.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 78.9177, "matched_fragments": 432, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum marinum", "strain": "strain=DSM 18063", "accession": "GCA_004343075.1", "taxid": 320662, "species_taxid": 320662, "relation_to_type": "type", "validated": true, "ani": 78.8839, "matched_fragments": 430, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquaemixtae", "strain": "strain=CECT 8399", "accession": "GCA_001458395.1", "taxid": 1396826, "species_taxid": 1396826, "relation_to_type": "type", "validated": true, "ani": 78.8806, "matched_fragments": 500, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum adriaticum", "strain": "strain=DSM 2781", "accession": "GCA_004345735.1", "taxid": 35804, "species_taxid": 35804, "relation_to_type": "type", "validated": true, "ani": 78.8594, "matched_fragments": 399, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum adriaticum", "strain": "strain=DSM 2781", "accession": "GCA_016583705.1", "taxid": 35804, "species_taxid": 35804, "relation_to_type": "type", "validated": true, "ani": 78.8335, "matched_fragments": 397, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 78.7695, "matched_fragments": 424, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 78.7554, "matched_fragments": 483, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Meinhardsimonia xiamenensis", "strain": "strain=CGMCC 1.10789", "accession": "GCA_900102905.1", "taxid": 990712, "species_taxid": 990712, "relation_to_type": "type", "validated": true, "ani": 78.6821, "matched_fragments": 455, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Meinhardsimonia xiamenensis", "strain": "strain=DSM 24422", "accession": "GCA_003001835.1", "taxid": 990712, "species_taxid": 990712, "relation_to_type": "type", "validated": true, "ani": 78.6447, "matched_fragments": 464, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoroseicyclus tamaricis", "strain": "strain=CLL3-39", "accession": "GCA_010435925.1", "taxid": 2705421, "species_taxid": 2705421, "relation_to_type": "type", "validated": true, "ani": 78.6255, "matched_fragments": 434, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoroseicyclus tamaricis", "strain": "strain=CLL3-39", "accession": "GCA_012070395.1", "taxid": 2705421, "species_taxid": 2705421, "relation_to_type": "type", "validated": true, "ani": 78.6056, "matched_fragments": 435, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiruegeria lutimaris", "strain": "strain=DSM 25294", "accession": "GCA_900099935.1", "taxid": 571298, "species_taxid": 571298, "relation_to_type": "type", "validated": true, "ani": 78.4819, "matched_fragments": 428, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiruegeria sabulilitoris", "strain": "strain=GJMS-35", "accession": "GCA_001558155.1", "taxid": 1510458, "species_taxid": 1510458, "relation_to_type": "type", "validated": true, "ani": 78.4723, "matched_fragments": 444, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 78.4672, "matched_fragments": 393, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 78.3971, "matched_fragments": 415, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 78.382, "matched_fragments": 367, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus ximenensis", "strain": "strain=T1lg56", "accession": "GCA_003056725.1", "taxid": 1911570, "species_taxid": 1911570, "relation_to_type": "type", "validated": true, "ani": 78.3552, "matched_fragments": 439, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum sulfidophilum", "strain": "strain=DSM 1374", "accession": "GCA_001633165.1", "taxid": 35806, "species_taxid": 35806, "relation_to_type": "type", "validated": true, "ani": 78.323, "matched_fragments": 426, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanomicrobium pacificus", "strain": "strain=KN286", "accession": "GCA_009833495.1", "taxid": 2692916, "species_taxid": 2692916, "relation_to_type": "type", "validated": true, "ani": 78.1637, "matched_fragments": 331, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia sediminis", "strain": "strain=SS33", "accession": "GCA_004358695.1", "taxid": 2547833, "species_taxid": 2547833, "relation_to_type": "type", "validated": true, "ani": 78.0421, "matched_fragments": 369, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter neptunius", "strain": "strain=DSM 26471", "accession": "GCA_900113955.1", "taxid": 588602, "species_taxid": 588602, "relation_to_type": "type", "validated": true, "ani": 77.8113, "matched_fragments": 357, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter litoreus", "strain": "strain=ASW11-22", "accession": "GCA_020165855.1", "taxid": 2876714, "species_taxid": 2876714, "relation_to_type": "type", "validated": true, "ani": 77.5311, "matched_fragments": 214, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900172235.1", "gtdb_species": "s__Pseudoruegeria aquimaris", "ani": 100.0, "matched_fragments": 1196, "total_fragments": 1200, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudoruegeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_018139985.1", "gtdb_species": "s__JAGSOU01 sp018139985", "ani": 79.9651, "matched_fragments": 574, "total_fragments": 1200, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__JAGSOU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015487335.1", "gtdb_species": "s__S012-89 sp015487335", "ani": 79.4524, "matched_fragments": 387, "total_fragments": 1200, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__S012-89", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102075.1", "gtdb_species": "s__Salipiger thiooxidans", "ani": 79.3733, "matched_fragments": 544, "total_fragments": 1200, "gtdb_taxonomy": 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