{ "type": "genome", "identifier": "GCF_900172255.1", "organism": "Roseovarius halotolerans", "title": "Roseovarius halotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900172255.1", "bioproject": "PRJNA224116", "biosample": "SAMEA102125668", "wgs_master": "FWFU00000000.1", "refseq_category": "na", "taxid": "505353", "species_taxid": "505353", "organism_name": "Roseovarius halotolerans", "infraspecific_name": "strain=CECT 8110", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/29", "asm_name": "R.halotolerans_CECT8110_Spades_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900172255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/172/255/GCF_900172255.1_R.halotolerans_CECT8110_Spades_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3725543", "genome_size_ungapped": "3725543", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900172255.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "3697", "protein_coding_gene_count": "3622", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-29", "dateModified": "2017-04-29", "datePublished": "2017-04-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseovarius halotolerans" ], "sample_taxid": [ "505353" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.029 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3725543", "Number of Sequences": "14", "Longest Sequences (bp)": "1420803", "N50 (bp)": "821111", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "3653", "Average Protein Length": "308.1", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseovarius halotolerans", "strain": "strain=CECT 8110", "accession": "GCA_900172255.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1234, "total_fragments": 1234, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=DSM 29507", "accession": "GCA_003634925.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 99.9972, "matched_fragments": 1231, "total_fragments": 1234, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseovarius litoreus", "strain": "strain=DSM 28249", "accession": "GCA_900142765.1", "taxid": 1155722, "species_taxid": 1155722, "relation_to_type": "type", "validated": true, "ani": 82.514, "matched_fragments": 764, "total_fragments": 1234, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=DSM 29589", "accession": "GCA_900142665.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 82.3166, "matched_fragments": 769, "total_fragments": 1234, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius 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"GCA_011601345.1", "taxid": 2716691, "species_taxid": 2716691, "relation_to_type": "type", "validated": true, "ani": 79.5659, "matched_fragments": 569, "total_fragments": 1234, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 79.351, "matched_fragments": 570, "total_fragments": 1234, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.9624, "matched_fragments": 433, "total_fragments": 1234, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 78.584, "matched_fragments": 390, "total_fragments": 1234, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquaemixtae", "strain": "strain=CECT 8399", "accession": "GCA_001458395.1", "taxid": 1396826, "species_taxid": 1396826, "relation_to_type": "type", "validated": true, "ani": 78.4403, "matched_fragments": 470, "total_fragments": 1234, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera daeponensis", "strain": "strain=DSM 23529", "accession": "GCA_000473145.1", "taxid": 405746, "species_taxid": 405746, "relation_to_type": "type", "validated": true, "ani": 78.3536, "matched_fragments": 464, "total_fragments": 1234, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, 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