{ "type": "genome", "identifier": "GCF_900172265.1", "organism": "Roseivivax jejudonensis", "title": "Roseivivax jejudonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900172265.1", "bioproject": "PRJNA224116", "biosample": "SAMEA102345418", "wgs_master": "FWFK00000000.1", "refseq_category": "reference genome", "taxid": "1529041", "species_taxid": "1529041", "organism_name": "Roseivivax jejudonensis", "infraspecific_name": "strain=CECT 8625", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/29", "asm_name": "R.jejudonensis_CECT8625_Spades_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900172265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/172/265/GCF_900172265.1_R.jejudonensis_CECT8625_Spades_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4312868", "genome_size_ungapped": "4312868", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900172265.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4180", "protein_coding_gene_count": "4108", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-29", "dateModified": "2017-04-29", "datePublished": "2017-04-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseivivax jejudonensis" ], "sample_taxid": [ "1529041" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.173 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4312868", "Number of Sequences": "21", "Longest Sequences (bp)": "1037545", "N50 (bp)": "618761", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.0", "Number of CDSs": "4173", "Average Protein Length": "310.0", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseivivax jejudonensis", "strain": "strain=CECT 8625", "accession": "GCA_900172265.1", "taxid": 1529041, "species_taxid": 1529041, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1428, 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"below_threshold" }, { "organism_name": "Roseivivax lentus", "strain": "strain=DSM 29430", "accession": "GCA_900156805.1", "taxid": 633194, "species_taxid": 633194, "relation_to_type": "type", "validated": true, "ani": 80.089, "matched_fragments": 679, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax halotolerans", "strain": "strain=JCM 10271", "accession": "GCA_900115815.1", "taxid": 93684, "species_taxid": 93684, "relation_to_type": "type", "validated": true, "ani": 79.6978, "matched_fragments": 594, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allosediminivita pacifica", "strain": "strain=DSM 29329", "accession": "GCA_003054175.1", "taxid": 1267769, "species_taxid": 1267769, "relation_to_type": "type", "validated": true, "ani": 79.2198, "matched_fragments": 533, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allosediminivita 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Roseivivax", "jejudonensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }