{ "type": "genome", "identifier": "GCF_900172375.1", "organism": "Aquimixticola soesokkakensis", "title": "Aquimixticola soesokkakensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900172375.1", "bioproject": "PRJNA224116", "biosample": "SAMEA102344668", "wgs_master": "FWFS00000000.1", "refseq_category": "reference genome", "taxid": "1519096", "species_taxid": "1519096", "organism_name": "Aquimixticola soesokkakensis", "infraspecific_name": "strain=CECT 8620", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/29", "asm_name": "A.soesokkakensis_CECT8620_Spades_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900172375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/172/375/GCF_900172375.1_A.soesokkakensis_CECT8620_Spades_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3490747", "genome_size_ungapped": "3490747", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900172375.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "3357", "protein_coding_gene_count": "3268", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-29", "dateModified": "2017-04-29", "datePublished": "2017-04-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Aquimixticola soesokkakensis" ], "sample_taxid": [ "1519096" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.973 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3490747", "Number of Sequences": "32", "Longest Sequences (bp)": "617776", "N50 (bp)": "264700", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.4", "Number of CDSs": "3340", "Average Protein Length": "311.7", "Coding Ratio (%)": "89.5", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquimixticola soesokkakensis", "strain": "strain=CECT 8620", "accession": "GCA_900172375.1", "taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 77.3453, "matched_fragments": 300, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola onchidii", "strain": "strain=XY-99", "accession": "GCA_004959925.1", "taxid": 2562279, "species_taxid": 2562279, "relation_to_type": "type", "validated": true, "ani": 77.3222, "matched_fragments": 235, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter alexandrii", "strain": "strain=LZ-17", "accession": "GCA_005871115.1", "taxid": 2570355, "species_taxid": 2570355, "relation_to_type": "type", "validated": true, "ani": 77.2673, "matched_fragments": 240, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter ponti", "strain": "strain=DSM 100977", "accession": "GCA_003054285.1", "taxid": 1510457, "species_taxid": 1510457, "relation_to_type": "type", "validated": true, "ani": 77.2637, "matched_fragments": 183, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobacter stenotrophicus", "strain": "strain=CECT 5294", "accession": "GCA_001458315.1", "taxid": 266809, "species_taxid": 266809, "relation_to_type": "type", "validated": true, "ani": 77.1673, "matched_fragments": 134, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter arenae", "strain": "strain=DSM 19593", "accession": "GCA_000442275.2", "taxid": 491388, "species_taxid": 491388, "relation_to_type": "type", "validated": true, "ani": 77.161, "matched_fragments": 180, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.1139, "matched_fragments": 211, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 77.1006, "matched_fragments": 180, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=DSM 18714", "accession": "GCA_900156695.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 77.0988, "matched_fragments": 230, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=JA123", "accession": 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