{ "type": "genome", "identifier": "GCF_900176135.1", "organism": "Hymenobacter roseosalivarius DSM 11622", "title": "Hymenobacter roseosalivarius DSM 11622", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900176135.1", "bioproject": "PRJNA224116", "biosample": "SAMN00120144", "wgs_master": "FWWW00000000.1", "refseq_category": "reference genome", "taxid": "645990", "species_taxid": "89967", "organism_name": "Hymenobacter roseosalivarius DSM 11622", "infraspecific_name": "strain=DSM 11622", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/07", "asm_name": "IMG-taxon 2502422321 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900176135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/176/135/GCF_900176135.1_IMG-taxon_2502422321_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4948485", "genome_size_ungapped": "4948485", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "123", "contig_count": "123", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900176135.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4360", "protein_coding_gene_count": "4248", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-07", "dateModified": "2017-04-07", "datePublished": "2017-04-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter roseosalivarius DSM 11622" ], "sample_taxid": [ "645990" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.412 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4948485", "Number of Sequences": "123", "Longest Sequences (bp)": "291541", "N50 (bp)": "85464", "Gap Ratio (%)": "0.000344", "GCcontent (%)": "56.4", "Number of CDSs": "4302", "Average Protein Length": "321.1", "Coding Ratio (%)": "83.7", "Number of rRNAs": "2", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter roseosalivarius", "strain": "strain=DSM 11622", "accession": "GCA_900176135.1", "taxid": 89967, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter duratus", "strain": "strain=BT646", "accession": "GCA_014698995.1", "taxid": 2771356, "species_taxid": 2771356, "relation_to_type": "type", "validated": true, "ani": 78.454, "matched_fragments": 551, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter lapidarius", "strain": "strain=CCM 8643", "accession": "GCA_001816145.1", "taxid": 1908237, "species_taxid": 1908237, "relation_to_type": "type", "validated": true, "ani": 78.3016, "matched_fragments": 503, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacialis", "strain": "strain=CCM 8648", "accession": "GCA_001816165.1", "taxid": 1908236, "species_taxid": 1908236, "relation_to_type": "type", "validated": true, "ani": 78.1095, "matched_fragments": 478, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 78.0816, "matched_fragments": 512, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter terricola", "strain": "strain=3F2", "accession": "GCA_017921975.2", "taxid": 2819236, "species_taxid": 2819236, "relation_to_type": "type", "validated": true, "ani": 77.9869, "matched_fragments": 554, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter montanus", "strain": "strain=BT664", "accession": "GCA_014699115.1", "taxid": 2771359, "species_taxid": 2771359, "relation_to_type": "type", "validated": true, "ani": 77.8234, "matched_fragments": 384, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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