{ "type": "genome", "identifier": "GCF_900176285.1", "organism": "Desulfacinum hydrothermale DSM 13146", "title": "Desulfacinum hydrothermale DSM 13146", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900176285.1", "bioproject": "PRJNA224116", "biosample": "SAMN02746041", "wgs_master": "FWXF00000000.1", "refseq_category": "reference genome", "taxid": "1121390", "species_taxid": "109258", "organism_name": "Desulfacinum hydrothermale DSM 13146", "infraspecific_name": "strain=DSM 13146", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/08", "asm_name": "IMG-taxon 2585428172 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900176285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/176/285/GCF_900176285.1_IMG-taxon_2585428172_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3696795", "genome_size_ungapped": "3696610", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900176285.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3292", "protein_coding_gene_count": "3195", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-08", "dateModified": "2017-04-08", "datePublished": "2017-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfacinum hydrothermale DSM 13146" ], "sample_taxid": [ "1121390" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Greece:Palaeochori Bay, south east Milos Island" ], "sample_host_location_id": [], "data_size": "1.039 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3696795", "Number of Sequences": "59", "Longest Sequences (bp)": "541887", "N50 (bp)": "185885", "Gap Ratio (%)": "0.005004", "GCcontent (%)": "61.0", "Number of CDSs": "3228", "Average Protein Length": "321.0", "Coding Ratio (%)": "84.1", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfacinum hydrothermale", "strain": "strain=DSM 13146", "accession": 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