{ "type": "genome", "identifier": "GCF_900176465.1", "organism": "Fulvimarina manganoxydans", "title": "Fulvimarina manganoxydans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900176465.1", "bioproject": "PRJNA224116", "biosample": "SAMN06297251", "wgs_master": "FWXR00000000.1", "refseq_category": "reference genome", "taxid": "937218", "species_taxid": "937218", "organism_name": "Fulvimarina manganoxydans", "infraspecific_name": "strain=CGMCC 1.10972", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/08", "asm_name": "IMG-taxon 2718217637 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900176465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/176/465/GCF_900176465.1_IMG-taxon_2718217637_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4827577", "genome_size_ungapped": "4827577", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "55", "contig_count": "55", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900176465.1-RS_2024_04_25", "annotation_date": "2024-04-25", "total_gene_count": "4477", "protein_coding_gene_count": "4339", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-08", "dateModified": "2017-04-08", "datePublished": "2017-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Fulvimarina manganoxydans" ], "sample_taxid": [ "937218" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.340 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4827577", "Number of Sequences": "55", "Longest Sequences (bp)": "569366", "N50 (bp)": "152022", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.9", "Number of CDSs": "4470", "Average Protein Length": "308.4", "Coding Ratio (%)": "85.7", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fulvimarina endophytica", "strain": "strain=85", "accession": "GCA_003403015.1", "taxid": 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"matched_fragments": 539, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimarina pelagi", "strain": "strain=HTCC2506", "accession": "GCA_000153705.1", "taxid": 217511, "species_taxid": 217511, "relation_to_type": "type", "validated": true, "ani": 79.0104, "matched_fragments": 483, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimarina pelagi", "strain": "strain=DSM 15513", "accession": "GCA_001463845.1", "taxid": 217511, "species_taxid": 217511, "relation_to_type": "type", "validated": true, "ani": 78.9452, "matched_fragments": 483, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=DSM 103570", "accession": "GCA_014196845.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 78.8857, "matched_fragments": 550, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 78.8141, "matched_fragments": 557, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas marina", "strain": "strain=SW136", "accession": "GCA_017183135.1", "taxid": 2780508, "species_taxid": 2780508, "relation_to_type": "type", "validated": true, "ani": 78.618, "matched_fragments": 478, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas mangrovi", "strain": "strain=LMG 31693", "accession": "GCA_014058705.1", "taxid": 2758041, "species_taxid": 2758041, "relation_to_type": "type", "validated": true, "ani": 78.0722, "matched_fragments": 358, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas pseudogalii", "strain": "strain=DSM 102238", "accession": "GCA_014196835.1", "taxid": 1744844, "species_taxid": 1744844, "relation_to_type": "type", "validated": true, "ani": 77.9387, "matched_fragments": 445, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Martelella mediterranea", "strain": "strain=MACL11", "accession": "GCA_002043005.1", "taxid": 293089, "species_taxid": 293089, "relation_to_type": "type", "validated": true, "ani": 77.6508, "matched_fragments": 257, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Martelella mediterranea", "strain": "strain=DSM 17316", "accession": "GCA_000376125.1", "taxid": 293089, "species_taxid": 293089, "relation_to_type": "type", "validated": true, "ani": 77.626, "matched_fragments": 250, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor alexandrii", "strain": "strain=Z3-1", "accession": "GCA_004000215.1", "taxid": 2448161, "species_taxid": 2448161, "relation_to_type": "type", "validated": true, "ani": 77.5791, "matched_fragments": 289, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 77.5765, "matched_fragments": 308, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia enhydra", "strain": "strain=ATCC 23634", "accession": "GCA_900119845.1", "taxid": 665118, "species_taxid": 665118, "relation_to_type": "type", "validated": true, "ani": 76.8931, "matched_fragments": 165, "total_fragments": 1582, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ 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