{ "type": "genome", "identifier": "GCF_900176485.1", "organism": "Primorskyibacter flagellatus", "title": "Primorskyibacter flagellatus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900176485.1", "bioproject": "PRJNA224116", "biosample": "SAMN06295998", "wgs_master": "FWYD00000000.1", "refseq_category": "na", "taxid": "1387277", "species_taxid": "1387277", "organism_name": "Primorskyibacter flagellatus", "infraspecific_name": "strain=CGMCC 1.12644", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/08", "asm_name": "IMG-taxon 2718217653 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900176485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/176/485/GCF_900176485.1_IMG-taxon_2718217653_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4414152", "genome_size_ungapped": "4414112", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "73", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-29", "total_gene_count": "4227", "protein_coding_gene_count": "4060", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-08", "dateModified": "2017-04-08", "datePublished": "2017-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Primorskyibacter flagellatus" ], "sample_taxid": [ "1387277" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.244 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4414152", "Number of Sequences": "73", "Longest Sequences (bp)": "612491", "N50 (bp)": "145014", "Gap Ratio (%)": "0.000906", "GCcontent (%)": "60.0", "Number of CDSs": "4149", "Average Protein Length": "310.6", "Coding Ratio (%)": "87.6", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Primorskyibacter marinus", "strain": "strain=PX7", "accession": "GCA_003313245.1", 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337701, "relation_to_type": "type", "validated": true, "ani": 78.3957, "matched_fragments": 383, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=CGMCC 1.7083", "accession": "GCA_014645335.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 78.3613, "matched_fragments": 384, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 78.2719, "matched_fragments": 499, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita lacus", "strain": "strain=CGMCC 1.12478", "accession": "GCA_014637725.1", "taxid": 1323742, "species_taxid": 1323742, "relation_to_type": "type", "validated": true, 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