{ "type": "genome", "identifier": "GCF_900176515.1", "organism": "Kibdelosporangium aridum", "title": "Kibdelosporangium aridum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900176515.1", "bioproject": "PRJNA224116", "biosample": "SAMN05661093", "wgs_master": "FWXV00000000.1", "refseq_category": "reference genome", "taxid": "2030", "species_taxid": "2030", "organism_name": "Kibdelosporangium aridum", "infraspecific_name": "strain=DSM 43828", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/08", "asm_name": "IMG-taxon 2595698251 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900176515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/176/515/GCF_900176515.1_IMG-taxon_2595698251_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "12276125", "genome_size_ungapped": "12273571", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900176515.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "11283", "protein_coding_gene_count": "11032", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-08", "dateModified": "2017-04-08", "datePublished": "2017-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Kibdelosporangium aridum" ], "sample_taxid": [ "2030" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Arizona, Pima County" ], "sample_host_location_id": [], "data_size": "3.373 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.86, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "12276125", "Number of Sequences": "41", "Longest Sequences (bp)": "2203829", "N50 (bp)": "717233", "Gap Ratio (%)": "0.020805", "GCcontent (%)": "66.2", "Number of CDSs": "11204", "Average Protein Length": "331.7", "Coding Ratio (%)": "90.8", "Number of rRNAs": "4", "Number of tRNAs": "80", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kibdelosporangium aridum", "strain": "strain=DSM 43828", "accession": 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77.9535, "matched_fragments": 733, "total_fragments": 4076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 77.9165, "matched_fragments": 1046, "total_fragments": 4076, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 77.7321, "matched_fragments": 761, "total_fragments": 4076, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.86, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900176515.1", "gtdb_species": "s__Kibdelosporangium aridum", "ani": 100.0, "matched_fragments": 4070, "total_fragments": 4076, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kibdelosporangium", "aridum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }