{ "type": "genome", "identifier": "GCF_900176615.1", "organism": "Clostridium massiliodielmoense", "title": "Clostridium massiliodielmoense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900176615.1", "bioproject": "PRJNA224116", "biosample": "SAMEA103970043", "wgs_master": "FXLO00000000.1", "refseq_category": "reference genome", "taxid": "1776385", "species_taxid": "1776385", "organism_name": "Clostridium massiliodielmoense", "infraspecific_name": "strain=MT26", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/27", "asm_name": "PRJEB20368", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900176615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/176/615/GCF_900176615.1_PRJEB20368", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2759335", "genome_size_ungapped": "2759335", "gc_percent": "28.500000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900176615.1-RS_2024_04_12", "annotation_date": "2024-04-12", "total_gene_count": "2765", "protein_coding_gene_count": "2636", "non_coding_gene_count": "101", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-27", "dateModified": "2017-04-27", "datePublished": "2017-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium massiliodielmoense" ], "sample_taxid": [ "1776385" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.746 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2759335", "Number of Sequences": "9", "Longest Sequences (bp)": "1729657", "N50 (bp)": "1729657", "Gap Ratio (%)": "0.000036", "GCcontent (%)": "28.4", "Number of CDSs": "2710", "Average Protein Length": "300.5", "Coding Ratio (%)": "88.6", "Number of rRNAs": "8", "Number of tRNAs": "79", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium massiliodielmoense", "strain": "strain=MT26", "accession": "GCA_900176615.1", "taxid": 1776385, "species_taxid": 1776385, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 906, "total_fragments": 915, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Clostridium thermopalmarium", "strain": "strain=DSM 5974", "accession": "GCA_002995795.1", "taxid": 29373, "species_taxid": 29373, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4471, "matched_fragments": 268, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium thermopalmarium", "strain": "strain=DSM 5974", "accession": "GCA_003097175.1", "taxid": 29373, "species_taxid": 29373, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3017, "matched_fragments": 276, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium homopropionicum", "strain": "strain=DSM 5847", "accession": "GCA_001263795.1", "taxid": 36844, "species_taxid": 36844, "relation_to_type": "type", "validated": true, "ani": 77.64, "matched_fragments": 215, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { 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