{
    "type": "genome",
    "identifier": "GCF_900177245.1",
    "organism": "Rathayibacter oskolensis",
    "title": "Rathayibacter oskolensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900177245.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06295885",
        "wgs_master": "FXBM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1891671",
        "species_taxid": "1891671",
        "organism_name": "Rathayibacter oskolensis",
        "infraspecific_name": "strain=VKM Ac-2121",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/04/21",
        "asm_name": "IMG-taxon 2708742461 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900177245.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/177/245/GCF_900177245.1_IMG-taxon_2708742461_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3946460",
        "genome_size_ungapped": "3946460",
        "gc_percent": "71.500000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900177245.1-RS_2024_04_25",
        "annotation_date": "2024-04-25",
        "total_gene_count": "3713",
        "protein_coding_gene_count": "3645",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-04-21",
    "dateModified": "2017-04-21",
    "datePublished": "2017-04-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rathayibacter oskolensis"
        ],
        "sample_taxid": [
            "1891671"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.039 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3946460",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "1927832",
        "N50 (bp)": "1280863",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.6",
        "Number of CDSs": "3713",
        "Average Protein Length": "323.5",
        "Coding Ratio (%)": "91.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rathayibacter festucae",
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                "accession": "GCA_004011135.1",
                "taxid": 110937,
                "species_taxid": 110937,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rathayibacter caricis",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Rathayibacter tanaceti",
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                "species_taxid": 1671680,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0481,
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                "total_fragments": 1312,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rathayibacter tanaceti",
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                "accession": "GCA_004340625.1",
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                "matched_fragments": 789,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rathayibacter tritici",
                "strain": "strain=DSM 7486",
                "accession": "GCA_002932875.1",
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                "species_taxid": 33888,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rathayibacter rathayi",
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                "species_taxid": 33887,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rathayibacter rathayi",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis subsp. tessellarius",
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                "accession": "GCA_002240635.1",
                "taxid": 31965,
                "species_taxid": 28447,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis subsp. tessellarius",
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                "accession": "GCA_021922985.1",
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                "relation_to_type": "type",
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                "ani": 79.4059,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.3708,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces mariniharenae",
                "strain": "strain=NEAU-184",
                "accession": "GCA_008122505.1",
                "taxid": 2604423,
                "species_taxid": 2604423,
                "relation_to_type": "type",
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                "matched_fragments": 529,
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        ],
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                "accession": "GCF_900177245.1",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter",
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            {
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        ]
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}