{ "type": "genome", "identifier": "GCF_900177375.1", "organism": "Desulfovibrio gilichinskyi", "title": "Desulfovibrio gilichinskyi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900177375.1", "bioproject": "PRJNA224116", "biosample": "SAMN06295933", "wgs_master": "FWZU00000000.1", "refseq_category": "reference genome", "taxid": "1519643", "species_taxid": "1519643", "organism_name": "Desulfovibrio gilichinskyi", "infraspecific_name": "strain=K3S", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/19", "asm_name": "IMG-taxon 2708742538 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900177375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/177/375/GCF_900177375.1_IMG-taxon_2708742538_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3962538", "genome_size_ungapped": "3962538", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900177375.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3611", "protein_coding_gene_count": "3528", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-19", "dateModified": "2017-04-19", "datePublished": "2017-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfovibrio gilichinskyi" ], "sample_taxid": [ "1519643" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.127 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3962538", "Number of Sequences": "14", "Longest Sequences (bp)": "1053313", "N50 (bp)": "654636", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.3", "Number of CDSs": "3539", "Average Protein Length": "330.6", "Coding Ratio (%)": "88.6", "Number of rRNAs": "4", "Number of tRNAs": "60", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Maridesulfovibrio frigidus", "strain": "strain=DSM 17176", "accession": "GCA_000711735.1", 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"gtdb_species": "s__Maridesulfovibrio sp010470665", "ani": 77.6809, "matched_fragments": 237, "total_fragments": 1314, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Maridesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000023445.1", "gtdb_species": "s__Maridesulfovibrio salexigens", "ani": 77.5154, "matched_fragments": 245, "total_fragments": 1314, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Maridesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { 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